Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Torrubiella_20hemipterigena_20[genbank_20GCA_5F000825705.1_202014-
12-05] 26 sequences; 28,476,206 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq1 185 1e-41
>seq1
Length=8525130
Score = 185 bits (204), Expect = 1e-41
Identities = 395/587 (67%), Gaps = 6/587 (1%)
Strand=Plus/Minus
Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641
|| || || ||| ||| ||||||||||| | | || | ||||| || || || ||
Sbjct 3939567 CAGGCAAAGTCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGA 3939508
Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701
|||||||| || || ||||| || ||||| || ||||| || || | || || ||||||
Sbjct 3939507 CCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCAGAGAAGAAG 3939448
Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGT 33758
|| || || || ||||||||||||| || | || || | | | |||||
Sbjct 3939447 ATACCCTCGACGGCAGCAAAGGCAACGAGACGCTGAGCAAAGGTAGAGTTCTTGTCAGAG 3939388
Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818
|||||||| | ||||| ||||||||||| | ||| || || || || ||||| ||
Sbjct 3939387 ATCCACTTCAGGGCCCAGTCGGCCTTCTTGCGGATACAGGGAATGGTCTCAATGGCGTTG 3939328
Query 33819 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33878
||||| || | | || || || || || ||||| || | || || |
Sbjct 3939327 AAGAGGTATGTGCGCTGGGTAGGCTCCTTGACGTAGGTATCAATAAGCAGGGAGTATGTC 3939268
Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33938
|| || || ||||| || || ||||| || |||||||| || | | |||||| ||||
Sbjct 3939267 TCAGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAGCGACCCTCGGGAATC 3939208
Query 33939 TGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCA 33998
|| || || | | || || || | || || || || || || ||| ||| |||
Sbjct 3939207 TGGACCTCGTTGGAGAAGCGCTCGAGAAGGTTCTCGTTAACAATACCGTCAGAGGCGGCA 3939148
Query 33999 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC--TGGTGTTA-GTTTATTCCAA 34055
|| || || | | || || || ||||| ||||| | || | | || ||||||
Sbjct 3939147 AAGAAGGCAAGAATGTGGGAGATGAAGTATTTCTCGTCATCGTTGAGACGGTTGTTCCAA 3939088
Query 34056 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 34115
|| | | ||| || || | ||| | |||||| ||||||| ||||| ||||| |||||
Sbjct 3939087 TCGTGCAGATCCTTGGAAAGATCGATTTCTTCGGCTGTCCAGAATGAGGCCTCGGCCTTC 3939028
Query 34116 TTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162
|| ||||| | |||||| || || || | ||| ||||| | ||| ||
Sbjct 3939027 TTGTACATCTGCCAGATCTCGTGGTACTTGATGGGGAAGAGAACGAA 3938981
Score = 136 bits (150), Expect = 5e-27
Identities = 439/677 (65%), Gaps = 16/677 (2%)
Strand=Plus/Plus
Query 63221 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63280
||| || || | || ||||| | | ||||||||||| | || || || ||||| ||
Sbjct 556901 AGGGCACTCGTTGGGGCACATGAGGGTCCACTCTCCGTTCTTCTCAACACGCTTCATGAA 556960
Query 63281 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGT 63340
||||| |||||||| ||||| | || ||||| | | | ||| || || ||
Sbjct 556961 AAGATCGGGAATCCAGAGAGCAAGGAAGAGATCACGGGCACGGACTTCTTCCTTACCATG 557020
Query 63341 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63400
|||||| ||| || |||||| | | | ||| | ||||| || || | ||| |||||
Sbjct 557021 ATTCTTGCGAAGGTCAAGGAACTCAAAGACATCTGCGTGCCAGGGCTCAAGGTAGATGGC 557080
Query 63401 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63460
| | || || || ||||| || || || || | ||| | |||||||| || | ||
Sbjct 557081 GAAGGCACCGGGACGCTTGTTACCACCTTGGTCGACGTAGCGGGCGGTGTTGTTGAAGAC 557140
Query 63461 TCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACT 63520
| |||||| || || | |||||| || |||| |||||||| | ||| || || |
Sbjct 557141 ACGCAACATGGGGATGACACCGTTGGAGGTACCGTTGGTACCAGCGATGTAAGAGCCTGT 557200
Query 63521 GGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 63578
|||||| || | ||| ||||| || || || ||||| || ||||| | ||
Sbjct 557201 GGCACGGATGCGGTGGGCGTTG--AGACCAATGCCACCAGCCATCTTGGAGATCATGGCA 557258
Query 63579 CATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAA 63638
|| || | || || || || || || |||||||| || |||||| || | ||
Sbjct 557259 CAGGTCTTGAGGGTATCGTAAATACCCTCAATGCTATCCTCCTTCATGTCAACCAAGAAG 557318
Query 63639 CAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 63698
||| ||| | ||| | | || || || || || | |||||| || || || ||
Sbjct 557319 CAGGAAGAAAGCTGGCACTGGGGTGTACCGGCGTTGAAGAGGGTAGGGGAGGCATGGGTG 557378
Query 63699 AACCATTTTTCAGAAAGTAGATTGTACGTCTCAATA----GCT-GA-GTCTATATCCCAT 63752
|| | || | ||| | || ||||| ||||| | | ||| || || | ||||
Sbjct 557379 AAGAACTTGTTAGACATGAGGTTGTAGGTCTCGAGAACACGCTCGATGTTGTCACCCCA- 557437
Query 63753 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTG 63812
||| || || ||||| | ||| | ||||||||| || | || || || ||| |
Sbjct 557438 -----AATACCGACAGCGACTCTCATGATCATGTGCTGGGGACGCTCGACGATCTTGCCG 557492
Query 63813 TTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 63872
| || || | || ||| || || | ||| || || || || || | ||| |||
Sbjct 557493 TCAATCTTGAGCAGGTATGAGCGCTCAAGAGTCTTGAAGCCGAAGTACTGGTAGTTGAAG 557552
Query 63873 TCTCGTTCGTAAATAAT 63889
|| || ||||| | |||
Sbjct 557553 TCACGGTCGTAGACAAT 557569
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629817395309280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |