Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Torrubiella_20hemipterigena_20[genbank_20GCA_5F000825705.1_202014- 12-05] 26 sequences; 28,476,206 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1 185 1e-41 >seq1 Length=8525130 Score = 185 bits (204), Expect = 1e-41 Identities = 395/587 (67%), Gaps = 6/587 (1%) Strand=Plus/Minus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || || || ||| ||| ||||||||||| | | || | |||||||| || || || Sbjct 3939567 CAGGCAAAGTCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGA 3939508 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 36277 |||||||| || || ||||| || ||||| || ||||| ||||| | ||||| ||||| Sbjct 3939507 CCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCAGAGAAGAAG 3939448 Query 36278 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTCATGT 36334 || || || || || |||||||||| || | || || | | | ||||| Sbjct 3939447 ATACCCTCGACGGCAGCAAAGGCAACGAGACGCTGAGCAAAGGTAGAGTTCTTGTCAGAG 3939388 Query 36335 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 36394 |||||||| | ||||| ||||||||||| | ||| || || ||||| || || || Sbjct 3939387 ATCCACTTCAGGGCCCAGTCGGCCTTCTTGCGGATACAGGGAATGGTCTCAATGGCGTTG 3939328 Query 36395 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATT 36454 ||||| || | | || || || || || |||||||| | || || | Sbjct 3939327 AAGAGGTATGTGCGCTGGGTAGGCTCCTTGACGTAGGTATCAATAAGCAGGGAGTATGTC 3939268 Query 36455 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 36514 || || || ||||| || || || || || |||||||| || | | |||||| |||| Sbjct 3939267 TCAGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAGCGACCCTCGGGAATC 3939208 Query 36515 TGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 36574 || || || | | || || || | || || || || || |||||| ||| ||| Sbjct 3939207 TGGACCTCGTTGGAGAAGCGCTCGAGAAGGTTCTCGTTAACAATACCGTCAGAGGCGGCA 3939148 Query 36575 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGT--TTGGTGTTA-GTTTATTCCAA 36631 || || || | | || || || ||||| |||| | | || | | || |||||| Sbjct 3939147 AAGAAGGCAAGAATGTGGGAGATGAAGTATTTCTCGTCATCGTTGAGACGGTTGTTCCAA 3939088 Query 36632 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 36691 || | | ||| || || | ||| | |||||| ||||||| ||||| ||||| ||||| Sbjct 3939087 TCGTGCAGATCCTTGGAAAGATCGATTTCTTCGGCTGTCCAGAATGAGGCCTCGGCCTTC 3939028 Query 36692 TTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 36738 || ||||| | |||||| || || || | || || || | ||| || Sbjct 3939027 TTGTACATCTGCCAGATCTCGTGGTACTTGATGGGGAAGAGAACGAA 3938981 Score = 145 bits (160), Expect = 1e-29 Identities = 447/687 (65%), Gaps = 16/687 (2%) Strand=Plus/Plus Query 66012 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 66071 ||||| || || | || ||||| | | ||||||||||| | || || || ||||| Sbjct 556899 CCAGGGCACTCGTTGGGGCACATGAGGGTCCACTCTCCGTTCTTCTCAACACGCTTCATG 556958 Query 66072 AAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCT 66131 || ||||| |||||||| ||||| | || | ||| | || | ||| || || || Sbjct 556959 AAAAGATCGGGAATCCAGAGAGCAAGGAAGAGATCACGGGCACGGACTTCTTCCTTACCA 557018 Query 66132 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATG 66191 |||||| ||| || |||||| | | | ||| ||||| || || | ||| ||| Sbjct 557019 TGATTCTTGCGAAGGTCAAGGAACTCAAAGACATCTGCGTGCCAGGGCTCAAGGTAGATG 557078 Query 66192 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 66251 || | | || || || ||||| || || || || | ||| | |||||||| || | Sbjct 557079 GCGAAGGCACCGGGACGCTTGTTACCACCTTGGTCGACGTAGCGGGCGGTGTTGTTGAAG 557138 Query 66252 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCA 66311 || | |||||| || || | ||| ||||| ||||| ||||| || | ||| || || Sbjct 557139 ACACGCAACATGGGGATGACACCGTTGGAGGTACCGTTGGTACCAGCGATGTAAGAGCCT 557198 Query 66312 CTTGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 66369 | ||||| || | ||| ||||| || || || ||||| || ||||| | | Sbjct 557199 GTGGCACGGATGCGGTGGGCGTTG--AGACCAATGCCACCAGCCATCTTGGAGATCATGG 557256 Query 66370 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 66429 | || || | ||||| || || ||||| || ||||| ||| |||||| || | | Sbjct 557257 CACAGGTCTTGAGGGTATCGTAAATACCCTCAATGCTATCCTCCTTCATGTCAACCAAGA 557316 Query 66430 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 66489 | ||| ||| | ||| | || || || || || | |||||| || || || | Sbjct 557317 AGCAGGAAGAAAGCTGGCACTGGGGTGTACCGGCGTTGAAGAGGGTAGGGGAGGCATGGG 557376 Query 66490 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATA----GCT-GA-GTCTATATCCC 66543 | || | || | ||| | || ||||| ||||| | | ||| || || | ||| Sbjct 557377 TGAAGAACTTGTTAGACATGAGGTTGTAGGTCTCGAGAACACGCTCGATGTTGTCACCCC 557436 Query 66544 ATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 66603 | ||| || || ||||| | ||| | ||||||||| || | || ||||||||| Sbjct 557437 A------AATACCGACAGCGACTCTCATGATCATGTGCTGGGGACGCTCGACGATCTTGC 557490 Query 66604 TGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 66663 || || || | || ||| || || | ||| || || || || || | ||| | Sbjct 557491 CGTCAATCTTGAGCAGGTATGAGCGCTCAAGAGTCTTGAAGCCGAAGTACTGGTAGTTGA 557550 Query 66664 AGTCTCGTTCGTAAATAATAACCGAGT 66690 |||| || ||||| | ||| | |||| Sbjct 557551 AGTCACGGTCGTAGACAATGGCAGAGT 557577 Score = 96.9 bits (106), Expect = 5e-15 Identities = 308/477 (65%), Gaps = 3/477 (1%) Strand=Plus/Plus Query 64827 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 64886 |||| ||| | ||||| ||||||||||||| || | | ||||| || |||||||| Sbjct 555705 TCCTGGTCGACGGTGAACTGAATGGGAGCGGCAGCAGCCTGGGTACGGAGGTAGTACATG 555764 Query 64887 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTC 64946 || || || |||||||| |||| ||| || ||||| || || | ||| | Sbjct 555765 CCGGTCTTGAGACCGAGCTTCCAACCGGCGAAGTGCATGCTGGTGATCTTGCCCATGGTG 555824 Query 64947 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 65006 || || || ||||| |||| || ||| || ||||||||||| || | ||| ||| Sbjct 555825 GGCTCACGCATGTGGATGTTCAAGGACTGAGACTGGTCGATGAAGGCACCACGGTCGGCA 555884 Query 65007 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 65066 | ||| | | | | || | ||| ||||||| ||| || |||| ||| || Sbjct 555885 GACATCTGGACAACCTGGCGCTGGGAAATCTCCCAAACAGTCTTGTAAAGGGCCTTGATG 555944 Query 65067 TCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTG 65123 || | || | ||| | | |||||||| ||||| || || || || | ||||| Sbjct 555945 TCGGCAGGGATGTTGGGGATGTTCTGAATAGATCCGTTCTCAGCAATGATACGGTTCTTC 556004 Query 65124 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 65183 || ||||| ||| || | ||| | | | | || | || ||||| || Sbjct 556005 ATGGCATCAGACCACAAGCCCATGTCGACAAGATCCTTGAGCAACCAGGGGTTAACAACC 556064 Query 65184 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGAC 65243 || || || |||| ||| || | || |||||| || || || || || | || Sbjct 556065 TGGAACTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGAAGTGTAGGGCTCGAAGCAC 556124 Query 65244 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 ||||| || || | ||| || | || |||||||| ||||| || || | ||| ||| Sbjct 556125 TCATTGTTGCCAAGAATCTGCGAGGTAGATGCAGTAGGCATGGGAGCAAGCAACAAA 556181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172586093840