Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Torrubiella_20hemipterigena_20[genbank_20GCA_5F000825705.1_202014- 12-05] 26 sequences; 28,476,206 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq1 105 6e-18 >seq1 Length=8525130 Score = 105 bits (116), Expect = 6e-18 Identities = 334/513 (65%), Gaps = 11/513 (2%) Strand=Plus/Minus Query 13675 TGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCT 13734 ||||| ||||| || | | || || ||||| || || || | || ||||| | || Sbjct 3939552 TGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCG 3939493 Query 13735 CGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCA 13794 || || || | ||| || || | || || | || || ||||| || ||||| || ||| Sbjct 3939492 CGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCAGAGAAGAAGATACCCTCGACGGCA 3939433 Query 13795 GCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCC 13854 ||||| || | || || | |||| | | || |||| || ||||| || ||| Sbjct 3939432 GCAAAGGCAACGAGACGCTGAGCAAAGGTAGAGTTCTTGTCAGAGATCCACTTCAGGGCC 3939373 Query 13855 CATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAA--ATGTTCCT 13912 || || | || || ||| | || || || || || ||||| | |||| | Sbjct 3939372 CAGTCGGCCTTCTTGCGGATACAGGGAATGGTCTCAATGGCGTTGAAGAGGTATGTGCG- 3939314 Query 13913 TCTCTTTAG--TACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTAT 13970 || ||| | ||||| ||| ||||||||||| | | || | |||||||| || Sbjct 3939313 -CTGGGTAGGCTCCTTGAC--GTAGGTATCAATAAGCAGGGAGTATGTCTCAGAGTGGAT 3939257 Query 13971 GTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGA 14030 ||| || || ||||| ||||| || || || | | | || | || ||||| Sbjct 3939256 GTTCTCCATCATGATCTGGAAACCGTAGAAGCAGCGACCCTCGGGAATCTGGACCTCGTT 3939197 Query 14031 GTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAA 14090 | | || | || | ||| || ||||||||||| ||| || ||||| || || | Sbjct 3939196 GGAGAAGCGCTCGAGAAGGTTCTCGTTAACAATACCGTCAGAGGCGGCAAAGAAGGCAAG 3939137 Query 14091 TATGTTTTTAATAAAGTATTGCTCTTCATTGTTGA---GTTTTTTCCAATCGGCTAAATC 14147 |||| || ||||||| ||| |||| ||||| | || ||||||||| | ||| Sbjct 3939136 AATGTGGGAGATGAAGTATTTCTCGTCATCGTTGAGACGGTTGTTCCAATCGTGCAGATC 3939077 Query 14148 CTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14180 ||| |||||||| | ||| || ||||||| || Sbjct 3939076 CTTGGAAAGATCGATTTCTTCGGCTGTCCAGAA 3939044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478588644458640