Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Torrubiella_20hemipterigena_20[genbank_20GCA_5F000825705.1_202014-
12-05] 26 sequences; 28,476,206 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq1 172 7e-38
>seq1
Length=8525130
Score = 172 bits (190), Expect = 7e-38
Identities = 392/587 (67%), Gaps = 6/587 (1%)
Strand=Plus/Minus
Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124
|| || || ||| ||| |||||||| || | | || | |||||||| || || ||
Sbjct 3939567 CAGGCAAAGTCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGA 3939508
Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184
|||||||| || || ||||| || ||||| || || || ||||| | ||||| ||||||
Sbjct 3939507 CCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCAGAGAAGAAG 3939448
Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTCATGT 42241
|| || || || || |||||||||| || | || || | | | |||||
Sbjct 3939447 ATACCCTCGACGGCAGCAAAGGCAACGAGACGCTGAGCAAAGGTAGAGTTCTTGTCAGAG 3939388
Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 42301
|||||||| | ||||| ||||||||||| | ||| || || || || ||||| ||
Sbjct 3939387 ATCCACTTCAGGGCCCAGTCGGCCTTCTTGCGGATACAGGGAATGGTCTCAATGGCGTTG 3939328
Query 42302 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATT 42361
||||| || | | || || || || || ||||| || | || || |
Sbjct 3939327 AAGAGGTATGTGCGCTGGGTAGGCTCCTTGACGTAGGTATCAATAAGCAGGGAGTATGTC 3939268
Query 42362 TCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACC 42421
|| || || ||||| || || ||||| || |||||||| || | |||||| || |
Sbjct 3939267 TCAGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAGCGACCCTCGGGAATC 3939208
Query 42422 TGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCA 42481
|| || || | | || || || | || ||||| || || |||||| ||| |||
Sbjct 3939207 TGGACCTCGTTGGAGAAGCGCTCGAGAAGGTTCTCGTTAACAATACCGTCAGAGGCGGCA 3939148
Query 42482 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC--CGGTGTTA-ATTTATTCCAA 42538
|| || || | | || || || ||||| ||||| || || | || ||||||
Sbjct 3939147 AAGAAGGCAAGAATGTGGGAGATGAAGTATTTCTCGTCATCGTTGAGACGGTTGTTCCAA 3939088
Query 42539 TCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTT 42598
|| | | ||| || || | ||| | |||||| | ||||| ||||| || || |||||
Sbjct 3939087 TCGTGCAGATCCTTGGAAAGATCGATTTCTTCGGCTGTCCAGAATGAGGCCTCGGCCTTC 3939028
Query 42599 TTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAA 42645
|| ||||| | |||||| || || || | || ||||| | ||| ||
Sbjct 3939027 TTGTACATCTGCCAGATCTCGTGGTACTTGATGGGGAAGAGAACGAA 3938981
Score = 104 bits (114), Expect = 3e-17
Identities = 307/473 (65%), Gaps = 3/473 (1%)
Strand=Plus/Plus
Query 70789 TCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATG 70848
|||| ||| | || ||||||||||||| || || || | ||||| || |||||||||
Sbjct 555705 TCCTGGTCGACGGTGAACTGAATGGGAGCGGCAGCAGCCTGGGTACGGAGGTAGTACATG 555764
Query 70849 CCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTA 70908
|| || || |||||||| |||| ||| || ||||| || || | ||| | |
Sbjct 555765 CCGGTCTTGAGACCGAGCTTCCAACCGGCGAAGTGCATGCTGGTGATCTTGCCCATGGTG 555824
Query 70909 GGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 70968
|| || ||||| || |||| |||||| || ||||||||||| || | ||| |||
Sbjct 555825 GGCTCACGCATGTGGATGTTCAAGGACTGAGACTGGTCGATGAAGGCACCACGGTCGGCA 555884
Query 70969 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 71028
| ||| | | | | || | ||| ||||||| ||| || |||| ||| ||
Sbjct 555885 GACATCTGGACAACCTGGCGCTGGGAAATCTCCCAAACAGTCTTGTAAAGGGCCTTGATG 555944
Query 71029 TCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTG 71085
|| | || | ||| | | |||||||| ||||| || ||||| || | || ||
Sbjct 555945 TCGGCAGGGATGTTGGGGATGTTCTGAATAGATCCGTTCTCAGCAATGATACGGTTCTTC 556004
Query 71086 ATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACT 71145
|| | ||| ||| || | ||| | | | | || | || ||||| ||
Sbjct 556005 ATGGCATCAGACCACAAGCCCATGTCGACAAGATCCTTGAGCAACCAGGGGTTAACAACC 556064
Query 71146 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGAC 71205
|| || || |||| ||| || | || |||||| || || || || || | ||
Sbjct 556065 TGGAACTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGAAGTGTAGGGCTCGAAGCAC 556124
Query 71206 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAA 71258
||||| || || | ||| || | || |||||||| ||||| || || | |||
Sbjct 556125 TCATTGTTGCCAAGAATCTGCGAGGTAGATGCAGTAGGCATGGGAGCAAGCAA 556177
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671138981879760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |