Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Torrubiella_20hemipterigena_20[genbank_20GCA_5F000825705.1_202014- 12-05] 26 sequences; 28,476,206 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1 311 1e-79 seq4 87.8 3e-12 >seq1 Length=8525130 Score = 311 bits (344), Expect = 1e-79 Identities = 608/887 (69%), Gaps = 31/887 (3%) Strand=Plus/Plus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 || || ||||||| ||| || || || ||| | |||||||| ||||| ||||||| || Sbjct 3938987 CTCTTCCCCATCAAGTACCACGAGATCTGGCAGATGTACAAGAAGGCCGAGGCCTCATTC 3939046 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||| | |||||| ||||||| |||||||| ||| |||||||| | | ||| | | Sbjct 3939047 TGGACAGCCGAAGAAATCGATCTTTCCAAGGATCTGCACGATTGGAACAACCGTCTCAAC 3939106 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 || ||| | | || || || |||||| | ||||||||||||| ||| || || || Sbjct 3939107 GATGACGAGAAATACTTCATCTCCCACATTCTTGCCTTCTTTGCCGCCTCTGACGGTATT 3939166 Query 125175 GTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TG 125233 || ||||| || || | || ||||| | ||| | ||||| |||| |||| || Sbjct 3939167 GTTAACGAGAACCTTCTCGAGCGCTTCTCCAACGAGGTCCAGATTCCCGAGG-GTCGCTG 3939225 Query 125234 CTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293 ||| ||||| ||||| |||||||| |||||| | ||||| || | ||||| || || Sbjct 3939226 CTTCTACGGTTTCCAGATCATGATGGAGAACATCCACTCTGAGACATACTCCCTGCTTAT 3939285 Query 125294 TGACATGTACATTCGCGA---TCCGCAACGTAAACACATGCTCTTTAACGCAATCGACAC 125350 ||| | ||| | || | | || || | | || ||||| ||||| || || || Sbjct 3939286 TGATACCTACGTCAAGGAGCCTACCCAGCGCACATAC---CTCTTCAACGCCATTGAGAC 3939342 Query 125351 GGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTC 125410 | || | ||| || || ||||| | |||| | ||||||| |||| | || || Sbjct 3939343 CATTCCCTGTATCCGCAAGAAGGCCGACTGGGCCCTGAAGTGGATCTCTGACAAGAACTC 3939402 Query 125411 TTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAG 125470 | | | || | | || || || || || ||||| ||||| |||||||| || ||| Sbjct 3939403 TACCTTTGCTCAGCGTCTCGTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCTCTGGTGC 3939462 Query 125471 TTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAA 125530 ||||| ||||||| ||||||||||||||||| ||||||||||| ||||| | || Sbjct 3939463 CTTTGCCTCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTGACCTTCTCCAA 3939522 Query 125531 CGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTG-TTTCGCA 125589 |||| | || ||||| |||||||| || ||| ||||||||| || ||| || || Sbjct 3939523 CGAGCTCATCTCTCGTGACGAGGGTCTTCACACCGACTTTGCCTGCCTTCTGCACTCCCA 3939582 Query 125590 ACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCAT---CAACATTGTAACCG 125646 | || | || ||| ||||| | | ||||||| | ||| | || | Sbjct 3939583 CC--TCAACAACC---GTG-----CCAGCAAGG---AGGTCATTGCCGGCATCATCACTG 3939629 Query 125647 ATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCA 125706 | || || | || || || ||||| || ||||| | || || | || | |||| Sbjct 3939630 ACGCTGTCACCATTGAGCAGGAGTTCCTTACCGAGGCTCTTCCTTGCGCTCTGCTCGGCA 3939689 Query 125707 TGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGT 125766 ||||| ||| || ||| ||||||| ||||| || || |||||||| || || Sbjct 3939690 TGAACGCCAACCTCATGAAGCAGTACATTGAGTTCGTCGCTGATCGTCTCCT---CGTCG 3939746 Query 125767 TGATTGGC--CG-CAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATAT 125823 ||||| || ||||||||||| ||| || ||||| || |||||| | ||| | Sbjct 3939747 CTCTTGGCAACGAGAAGATTTACAAGTCCACCAACCCCTTCGACTTCATGGAGAACATCT 3939806 Query 125824 CACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 | || | || ||||||||||| ||||||||| || |||||||| Sbjct 3939807 CCCTTGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGCGAGTAC 3939853 Score = 143 bits (158), Expect = 4e-29 Identities = 305/449 (68%), Gaps = 10/449 (2%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 || || || || || || || || || | ||| ||||| | || || |||||||| || Sbjct 557110 CAAGGTGGTAACAAGCGTCCCGGTGCCTTCGCCATCTACCTTGAGCCCTGGCACGCAGAT 557051 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || ||||| || | || | ||||| || ||| ||||| | || ||| | || Sbjct 557050 GTCTTTGAGTTCCTTGACCTTCGCAAGAATCATGGTAAGGAAGAAGTCCGTGCCCGTGAT 556991 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC---AACGACGGTGGC 97052 | || ||| |||||| | || ||| | ||||||||||| || || |||| | Sbjct 556990 CTCTTCCTTGCTCTCTGGATTCCCGATCTTTTCATGAAGCGTGTTGAGAAGAACGGAG-- 556933 Query 97053 TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAG 97112 | |||| ||| ||||||||| || || || || || ||||||||| || || || Sbjct 556932 -AGTGGACCCTCATGTGCCCCAACGAGTGCCCTGGCCTTGCCGATTGCTACGGTGAGGAA 556874 Query 97113 TTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATAC-GTGAGACGAGTCGATGC 97171 || |||||| |||| | |||||| |||||||| | | |||| | || | || Sbjct 556873 TTCGAGGCCCTGTACGAGAAGTACGAGGCTGAGGGCCGTGGCCGCAAGACCA-TCAAGGC 556815 Query 97172 ACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTC 97230 | |||| || ||| | |||||| | ||||||| |||||||| | || | ||| | Sbjct 556814 TC-AGAAGCTTTGGTACGCCATCCTTGAGGCTCAGACCGAGACTGGTAACCCCTTCATGC 556756 Query 97231 TCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCT 97290 |||||||||| | || ||||| |||||||| ||||||| |||||| ||| Sbjct 556755 TCTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACTTGGGTACCATCCGCAGCT 556696 Query 97291 CCAATCTGTGCACGGAAATTGTAGAGTAC 97319 |||| || ||||| || ||| | |||||| Sbjct 556695 CCAACCTCTGCACTGAGATTATCGAGTAC 556667 >seq4 Length=2750940 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 127126 CGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTCACAATGTCACAATACTCAAAGGGG 127185 || ||||| | ||||| |||||| || || ||||| || || ||| ||||| |||||| Sbjct 970694 CGGGGACCACGGAGAGACTTGTGGGTGGTGGTGGTGACGATATCAGCGTACTCGAAGGGG 970635 Query 127186 CCAGGAATGACTTTGCCCGCAATCAAGCCCGCAATGTGTGCAATATCGGCCATCAGCAAG 127245 | || ||||| | | | ||||| | || | |||||| || || ||| |||| || || Sbjct 970634 CTGGGGATGACCTGGGCGGCAATGAGACCAGAAATGTGAGCCATGTCGACCATGAGGTAG 970575 Query 127246 GAGCCGGCTGCATCGGCAATCTCTCG 127271 | |||| | | ||||||||||| || Sbjct 970574 GCGCCGACGGAGTCGGCAATCTCGCG 970549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058959155760