Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Torrubiella_20hemipterigena_20[genbank_20GCA_5F000825705.1_202014- 12-05] 26 sequences; 28,476,206 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq3 100 2e-16 >seq3 Length=4610873 Score = 100 bits (110), Expect = 2e-16 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || ||||||| | | || | ||| || ||||||||||| ||||||||||| |||| Sbjct 3673192 CCACCGCGCAGACGGAGGACGAGATGCAGAGTGCTCTCCTTCTGAATGTTGTAGTCAGAG 3673251 Query 48560 A-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | | || || | || || ||||||||||| | | || | ||| ||||| || || Sbjct 3673252 AGAGTG-CGGCCATCTTCAAGCTGCTTACCAGCAAAGATAAGACGTTGCTGGTCAGGAGG 3673310 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCC 48676 | || ||||| ||| ||| ||| ||||| | | || |||||||| | |||||| Sbjct 3673311 AATACCCTCCTTATCCTGAATCTTCGACTTGACGTTGTCG--ATGGTATCAGAAGACTCA 3673368 Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | ||| || || || |||||||| || || || ||||||||||| Sbjct 3673369 ACCTCCAATGTGATCGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 3673418 Score = 84.2 bits (92), Expect = 2e-11 Identities = 127/181 (70%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||||||||||| |||||||||||||||| | || | ||||| |||||| Sbjct 3673900 TGGAGGGTGCTCTCCTTCTGAATGTTGTAATCAGAGAGGGTGCGGCCATCCTCGAGCTGC 3673959 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || || |||| | |||||||| || || | | ||||||||| ||| || Sbjct 3673960 TTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGGGGAATTCCCTCCTTGTCCTGAATCTTG 3674019 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | ||||| |||| |||||| ||||| || ||||| || |||||| Sbjct 3674020 GACTTGACGTTGTCAATGGTGTCGGAAGACTCAACCTCGAGGGTAATGGTCTTGCCGGTG 3674079 Query 48704 A 48704 | Sbjct 3674080 A 3674080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421251066516026