Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Torrubiella_20hemipterigena_20[genbank_20GCA_5F000825705.1_202014- 12-05] 26 sequences; 28,476,206 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2 174 2e-39 seq5 165 1e-36 >seq2 Length=6006343 Score = 174 bits (192), Expect = 2e-39 Identities = 205/275 (75%), Gaps = 2/275 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 |||||||||||| ||| |||| |||||| || ||||| || || ||||||||||| |||| Sbjct 3238354 CGCTAAGCGTCACCGCAAGAT-TCTTCGTGACAACATTCAGGGTATCACCAAGCCCGCTA 3238412 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| |||||||||||||| ||||||||| | |||| || |||| || |||| Sbjct 3238413 TCCGCCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCTGCCATGATCTACGAGGAGA 3238472 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| |||| | ||||||| || ||| |||| |||||| || || || | Sbjct 3238473 CTCGCACTGTTCTCCGCTCCTTCCTCGAGGGCGTCATCCGTGATGCCGTCACATACACTG 3238532 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| ||||| || |||| | ||||| || | || || || | Sbjct 3238533 AGCACGCCAAGCGCAAGACCGTCACATCGCTGGACGTTGTCTACGCTCTCAAGCGCCAGG 3238592 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705 |||||| | || ||||| || ||||| | ||| Sbjct 3238593 GCCGTACCCTCTACGGTTTCGGTGGTTAAGCGTCT 3238627 >seq5 Length=2539488 Score = 165 bits (182), Expect = 1e-36 Identities = 201/269 (75%), Gaps = 4/269 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||| ||| |||| |||||| || ||||| || || ||||||||||| ||||| Sbjct 1469403 GCTAAGCGTCACCGCAAGAT-TCTTCGTGACAACATTCAGGGTATCACCAAGCCCGCTAT 1469461 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| |||||||||||||| ||||||||| | |||| || |||| || |||| Sbjct 1469462 CCGCCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCTGCCATGATCTACGAGGAGAC 1469521 Query 16552 TCGTGATGTTTTGAAGATC-TTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || |||| | | || ||||| || ||| |||| |||||| || ||| || | Sbjct 1469522 CCGCACTGTTCT-CCGTTCTTTCCTTGAGGGCGTCATCCGTGATGCCGTCACCTACACTG 1469580 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| |||||||| | || | ||||| || | || || || | Sbjct 1469581 AGCACGCCAAGCGCAAGACCGTCACCTCGCTCGACGTTGTCTACGCTCTCAAGCGCCAGG 1469640 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | || ||||| || ||||| Sbjct 1469641 GCCGTACCCTCTACGGTTTCGGTGGTTAA 1469669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075176228018