Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Torrubiella_20hemipterigena_20[genbank_20GCA_5F000825705.1_202014- 12-05] 26 sequences; 28,476,206 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1 172 1e-37 seq3 104 5e-17 >seq1 Length=8525130 Score = 172 bits (190), Expect = 1e-37 Identities = 556/853 (65%), Gaps = 19/853 (2%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | || ||||| ||||||||||||||||||||| ||| Sbjct 3939834 TCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTG 3939775 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| ||| | |||||| || |||| || || || || || ||||| | Sbjct 3939774 GACTTGTAAATCTTCTCGTTGCCAAGAGCGACGAGGAGACGATCAGCGACGAACTCAATG 3939715 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||| || | | ||||||||| | || | ||||||| ||||| | | Sbjct 3939714 TACTGCTTCATGAGGTTGGCGTTCATGCCGAGCAGAGCGCAAGGAAGAGCCTCGGTAAGG 3939655 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATT---GCCTTCACCTG-TGCCAGAGA 251798 || |||| || ||| || || || | || || | |||| | | | | Sbjct 3939654 AACTCCTGCTCAATGGTGACAGCGTCAGTGATGATGCCGGCAATGACCTCCTTGCTGGCA 3939595 Query 251799 CAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858 | | ||||| || | |||| ||| || | |||| | ||| ||||||||||| Sbjct 3939594 CGG-TTGTTG---AGGTGGGAGTGCAGAAGGCAGGCAAAGTCGGTGTGAAGACCCTCGTC 3939539 Query 251859 GCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCA 251918 ||| ||||| ||||||||| | ||| || ||||| | || || ||| ||||||| Sbjct 3939538 ACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCGCGCTTCTTGAGCCA 3939479 Query 251919 GAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAG 251978 |||||| | | ||||| |||||||| | | ||||||||| | | ||||| || Sbjct 3939478 GAAGATGGAGGCAAAGGCACCAGAGAAGAAGATACCCTCGACGGCAGCAAAGGCAACGAG 3939419 Query 251979 GCGCTCAGCAAA---CGACTTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGCCTTCTT 252035 |||| |||||| || || | | || | ||||| | ||||| | |||||||| Sbjct 3939418 ACGCTGAGCAAAGGTAGAGTTCTTGTCAGAGATCCACTTCAGGGCCCAGTCGGCCTTCTT 3939359 Query 252036 TCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCCTC 252095 | | ||| || || || || || | ||||| | | |||| || | |||| Sbjct 3939358 GCGGATACAGGGAATGGTCTCAATGGCGTTGAAGAGGTATGTGCGCTGGGTAGGCTCCTT 3939299 Query 252096 GATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACATCTG 252155 || | | ||||| || || ||||| |||| || |||||| || | | ||||| Sbjct 3939298 GACGTAGGTATCAATAAGCAGGGAGTATGTCTCAGAGTGGATGTTCTCCATCATGATCTG 3939239 Query 252156 GTAAGCATAGA---ATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTTGC 252212 | || | |||| | ||| | ||| | || | ||| || |||| ||| | Sbjct 3939238 GAAACCGTAGAAGCAGCGACCCTCGG--GAATCTG-GACCTCGTTGGAGAAGCGCTCGAG 3939182 Query 252213 AATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGAA 252272 || |||||| | || || || || | | ||||||||| |||||||| |||||| Sbjct 3939181 AAGGTTCTCGTTAACAATACCGTCAGAGGCGGCAAAGAAGGCAAGAATGTGGGAGATGAA 3939122 Query 252273 GTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGGAAC 252332 || ||| || |||||||| || ||| ||| | |||| ||| | Sbjct 3939121 GTATTTCTCGTCATCGTTGAGACGGTTGTTCCAATCGTGCAGATCCTTGGAAAGATCGAT 3939062 Query 252333 TTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT-TGCGAACACATCAGGGT 252391 |||||| | |||||||||| || | | |||||||||||||| ||| | | || ||| Sbjct 3939061 TTCTTCGGCTGTCCAGAATGAGGCCTCGGCCTTCTTGTACATCTGC-CAGATCTCGTGGT 3939003 Query 252392 ACTTGATTGGGAA 252404 ||||||| ||||| Sbjct 3939002 ACTTGATGGGGAA 3938990 >seq3 Length=4610873 Score = 104 bits (114), Expect = 5e-17 Identities = 177/253 (70%), Gaps = 8/253 (3%) Strand=Plus/Plus Query 279320 CGAAGCAGAGAAGGAGACTGA---GCCAG---GTGAGGATCTGTGTGACTGTGATTTCTC 279373 ||||| ||||||||| |||| | || |||||||||| || |||| |||||| Sbjct 1862157 CGAAGAGGAGAAGGAGGCTGACGAGGAAGAGGGTGAGGATCTCTGCAACTGCACTTTCTC 1862216 Query 279374 GCTCGCATATGGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAA 279433 || || || |||| |||||||| || ||| || | |||| | |||||||||| | Sbjct 1862217 TCTTGCCTACGGTGCCAAGATTCTTCTCAACCAGACTCACCTCCGCCTCAAGCGTGGTCA 1862276 Query 279434 CCGGTATGGTCTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGC 279493 || || ||||| ||||||||| || | || ||| ||| || ||||||||||| Sbjct 1862277 GCGCTACGGTCTTTGCGGTCCCAACGGTTCTGGCAAGTCCACCCTCATGCGCGCCATCAA 1862336 Query 279494 AAACGGTCAGCTGGAAGGATTTCCTAACGCA-TCTGAGGTAAGGACAGTGTATGTAGAGC 279552 |||| ||| | || || || || || ||| ||||| | ||| || | || |||| Sbjct 1862337 CAACGAGCAGGTCGAGGGCTTCCCCAA-GCAGAGCGAGGTCAAGACTGTCTTCGTCGAGC 1862395 Query 279553 ACGACATCGACTC 279565 ||||| | ||||| Sbjct 1862396 ACGACCTGGACTC 1862408 Score = 96.9 bits (106), Expect = 7e-15 Identities = 96/122 (79%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760 ||||||| ||||| || ||||| ||||| |||||| ||||| |||| ||| || Sbjct 1863590 CTCACTCCCGCATGCGTGGTCTGTCTGGTGGCCAGCGTGTCAAGACTGTCCTCGCTGCTT 1863649 Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820 ||||| ||||| | |||||| ||||||| || ||||||||||||||||| || ||||| Sbjct 1863650 GCTCT-TGGCAGCGTCCTCACTTGATCGTCCTTGACGAGCCTACCAACTACCTTGACCGT 1863708 Query 280821 GA 280822 || Sbjct 1863709 GA 1863710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836457601866