Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Torrubiella_20hemipterigena_20[genbank_20GCA_5F000825705.1_202014-
12-05] 26 sequences; 28,476,206 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq1 172 1e-37
seq3 104 5e-17
>seq1
Length=8525130
Score = 172 bits (190), Expect = 1e-37
Identities = 556/853 (65%), Gaps = 19/853 (2%)
Strand=Plus/Minus
Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622
|||||||| || | |||||| | || ||||| ||||||||||||||||||||| |||
Sbjct 3939834 TCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTG 3939775
Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682
| ||||| ||| | |||||| || |||| || || || || || ||||| |
Sbjct 3939774 GACTTGTAAATCTTCTCGTTGCCAAGAGCGACGAGGAGACGATCAGCGACGAACTCAATG 3939715
Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742
||||| ||| || | | ||||||||| | || | ||||||| ||||| | |
Sbjct 3939714 TACTGCTTCATGAGGTTGGCGTTCATGCCGAGCAGAGCGCAAGGAAGAGCCTCGGTAAGG 3939655
Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATT---GCCTTCACCTG-TGCCAGAGA 251798
|| |||| || ||| || || || | || || | |||| | | | |
Sbjct 3939654 AACTCCTGCTCAATGGTGACAGCGTCAGTGATGATGCCGGCAATGACCTCCTTGCTGGCA 3939595
Query 251799 CAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858
| | ||||| || | |||| ||| || | |||| | ||| |||||||||||
Sbjct 3939594 CGG-TTGTTG---AGGTGGGAGTGCAGAAGGCAGGCAAAGTCGGTGTGAAGACCCTCGTC 3939539
Query 251859 GCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCA 251918
||| ||||| ||||||||| | ||| || ||||| | || || ||| |||||||
Sbjct 3939538 ACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCGCGCTTCTTGAGCCA 3939479
Query 251919 GAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAG 251978
|||||| | | ||||| |||||||| | | ||||||||| | | ||||| ||
Sbjct 3939478 GAAGATGGAGGCAAAGGCACCAGAGAAGAAGATACCCTCGACGGCAGCAAAGGCAACGAG 3939419
Query 251979 GCGCTCAGCAAA---CGACTTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGCCTTCTT 252035
|||| |||||| || || | | || | ||||| | ||||| | ||||||||
Sbjct 3939418 ACGCTGAGCAAAGGTAGAGTTCTTGTCAGAGATCCACTTCAGGGCCCAGTCGGCCTTCTT 3939359
Query 252036 TCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCCTC 252095
| | ||| || || || || || | ||||| | | |||| || | ||||
Sbjct 3939358 GCGGATACAGGGAATGGTCTCAATGGCGTTGAAGAGGTATGTGCGCTGGGTAGGCTCCTT 3939299
Query 252096 GATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACATCTG 252155
|| | | ||||| || || ||||| |||| || |||||| || | | |||||
Sbjct 3939298 GACGTAGGTATCAATAAGCAGGGAGTATGTCTCAGAGTGGATGTTCTCCATCATGATCTG 3939239
Query 252156 GTAAGCATAGA---ATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTTGC 252212
| || | |||| | ||| | ||| | || | ||| || |||| ||| |
Sbjct 3939238 GAAACCGTAGAAGCAGCGACCCTCGG--GAATCTG-GACCTCGTTGGAGAAGCGCTCGAG 3939182
Query 252213 AATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGAA 252272
|| |||||| | || || || || | | ||||||||| |||||||| ||||||
Sbjct 3939181 AAGGTTCTCGTTAACAATACCGTCAGAGGCGGCAAAGAAGGCAAGAATGTGGGAGATGAA 3939122
Query 252273 GTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGGAAC 252332
|| ||| || |||||||| || ||| ||| | |||| ||| |
Sbjct 3939121 GTATTTCTCGTCATCGTTGAGACGGTTGTTCCAATCGTGCAGATCCTTGGAAAGATCGAT 3939062
Query 252333 TTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT-TGCGAACACATCAGGGT 252391
|||||| | |||||||||| || | | |||||||||||||| ||| | | || |||
Sbjct 3939061 TTCTTCGGCTGTCCAGAATGAGGCCTCGGCCTTCTTGTACATCTGC-CAGATCTCGTGGT 3939003
Query 252392 ACTTGATTGGGAA 252404
||||||| |||||
Sbjct 3939002 ACTTGATGGGGAA 3938990
>seq3
Length=4610873
Score = 104 bits (114), Expect = 5e-17
Identities = 177/253 (70%), Gaps = 8/253 (3%)
Strand=Plus/Plus
Query 279320 CGAAGCAGAGAAGGAGACTGA---GCCAG---GTGAGGATCTGTGTGACTGTGATTTCTC 279373
||||| ||||||||| |||| | || |||||||||| || |||| ||||||
Sbjct 1862157 CGAAGAGGAGAAGGAGGCTGACGAGGAAGAGGGTGAGGATCTCTGCAACTGCACTTTCTC 1862216
Query 279374 GCTCGCATATGGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAA 279433
|| || || |||| |||||||| || ||| || | |||| | |||||||||| |
Sbjct 1862217 TCTTGCCTACGGTGCCAAGATTCTTCTCAACCAGACTCACCTCCGCCTCAAGCGTGGTCA 1862276
Query 279434 CCGGTATGGTCTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGC 279493
|| || ||||| ||||||||| || | || ||| ||| || |||||||||||
Sbjct 1862277 GCGCTACGGTCTTTGCGGTCCCAACGGTTCTGGCAAGTCCACCCTCATGCGCGCCATCAA 1862336
Query 279494 AAACGGTCAGCTGGAAGGATTTCCTAACGCA-TCTGAGGTAAGGACAGTGTATGTAGAGC 279552
|||| ||| | || || || || || ||| ||||| | ||| || | || ||||
Sbjct 1862337 CAACGAGCAGGTCGAGGGCTTCCCCAA-GCAGAGCGAGGTCAAGACTGTCTTCGTCGAGC 1862395
Query 279553 ACGACATCGACTC 279565
||||| | |||||
Sbjct 1862396 ACGACCTGGACTC 1862408
Score = 96.9 bits (106), Expect = 7e-15
Identities = 96/122 (79%), Gaps = 2/122 (2%)
Strand=Plus/Plus
Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760
||||||| ||||| || ||||| ||||| |||||| ||||| |||| ||| ||
Sbjct 1863590 CTCACTCCCGCATGCGTGGTCTGTCTGGTGGCCAGCGTGTCAAGACTGTCCTCGCTGCTT 1863649
Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820
||||| ||||| | |||||| ||||||| || ||||||||||||||||| || |||||
Sbjct 1863650 GCTCT-TGGCAGCGTCCTCACTTGATCGTCCTTGACGAGCCTACCAACTACCTTGACCGT 1863708
Query 280821 GA 280822
||
Sbjct 1863709 GA 1863710
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027836457601866
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |