Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Torrubiella_20hemipterigena_20[genbank_20GCA_5F000825705.1_202014- 12-05] 26 sequences; 28,476,206 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq1 114 3e-20 >seq1 Length=8525130 Score = 114 bits (126), Expect = 3e-20 Identities = 346/530 (65%), Gaps = 21/530 (4%) Strand=Plus/Plus Query 243208 CTTTTCGACGCCATCGAAAACATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAG 243267 || ||| ||||||| || | |||||| | | || ||||| | ||||| | |||| Sbjct 3939323 CTCTTCAACGCCATTGAGACCATTCCCTGTATCCGCAAGAAGGCCGACTGGGCCCTGAAG 3939382 Query 243268 TGGCT--------AGAACCCGGTAAATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCG 243319 ||| | ||||| | || | |||||| |||||||||| |||| | || Sbjct 3939383 TGGATCTCTGACAAGAACTC--TA---CCTTTGCTCAGCGTCTCGTTGCCTTTGCTGCCG 3939437 Query 243320 TTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTG 243379 | || ||||| | || || || || | ||||||| ||||| ||| ||| Sbjct 3939438 TCGAGGGTATCTTCTTCTCTGGTGCCTTTGCCTCCATCTTCTGGCTCAAGAAGCGCGGTC 3939497 Query 243380 TGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAAC 243439 | ||||| || || | || |||||| ||||| ||| |||||||| |||||| Sbjct 3939498 TCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGTCTTCACACCG 3939557 Query 243440 AGTTCGGTGAGCTTATGTATTCAAAGCTCCAGAACAAGC-TACCATTCGAAACGGTCAAA 243498 | || | ||| || | || | ||| ||||| | | ||| | | ||||| Sbjct 3939558 ACTTTGCCTGCCTTCTGCACTCCCACCTC---AACAACCGTGCCAG-CAAGGAGGTCATT 3939613 Query 243499 CAA---ATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCA 243555 |||||||| || || || | || |||| ||| || ||| ||| |||| Sbjct 3939614 GCCGGCATCATCACTGACGCTGTCACCATTGAGCAGGAGTTCCTTACCGAGGCTCTTCCT 3939673 Query 243556 TGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGAC 243615 ||| || | ||||||||| | | |||||| |||||||| || ||||| || || Sbjct 3939674 TGCGCTCTGCTCGGCATGAACGCCAACCTCATGAAGCAGTACATTGAGTTCGTCGCTGAT 3939733 Query 243616 CGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTT 243675 || | || |||| ||||| | ||||| | ||||| |||| |||||||| | ||| Sbjct 3939734 CGTCTCCTCGTCGCTCTTGGCAACGAGAAGATTTACAAGTCCACCAACCCCTTCGACTTC 3939793 Query 243676 ATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 |||||| ||| || ||| || || || ||||||||||| |||||||| Sbjct 3939794 ATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTCGAGAAGCGTGT 3939843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102879632603100