Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Torrubiella_20hemipterigena_20[genbank_20GCA_5F000825705.1_202014-
12-05] 26 sequences; 28,476,206 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq3 102 9e-17
seq7 86.0 7e-12
>seq3
Length=4610873
Score = 102 bits (112), Expect = 9e-17
Identities = 152/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
||||| |||||| |||| || |||||| ||||| ||||| || |||||| || |
Sbjct 3673431 ACGCAGCACCAAGTGCAGAGTAGACTCCTTCTGAATGTTGTAGTCGCTCAGAGTGCGACC 3673490
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
||| || ||||||||||| || || || || |||||||| || | || | | ||||||
Sbjct 3673491 GTCCTCGAGCTGCTTACCGGCAAAGATAAGACGCTGCTGATCAGGAGGGATACCCTCCTT 3673550
Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172
|| ||| ||| |||| | | | ||||| || || || || | || ||
Sbjct 3673551 ATCTTGGATCTTTGACTTGACATTGTCGATTGTGTCCGATGACTCAACTTCTAATGTAAT 3673610
Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| ||||| || || ||||| ||||||||||||||
Sbjct 3673611 AGTCTTGCCAGTAAGAGTCTTGACAAAGATTTGCAT 3673646
Score = 98.7 bits (108), Expect = 1e-15
Identities = 130/175 (74%), Gaps = 4/175 (2%)
Strand=Plus/Plus
Query 42012 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 42071
||||||||||| ||||| |||||||||| || || || | || || |||||||| |||
Sbjct 3673906 GTGCTCTCCTTCTGAATGTTGTAATCAGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCA 3673965
Query 42072 GCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTT 42130
||||| || || ||||||||||| | || | | |||||||||| ||| | || | ||
Sbjct 3673966 GCGAAAATCAGGCGCTGCTGGTCAGGGGGAATTCCCTCCTTGTCC-TGAATCTTGGACTT 3674024
Query 42131 GAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 42184
|| ||| | | | |||||| || || || |||| || ||||| ||||| ||
Sbjct 3674025 GA-CGTTGTCAATGGTGTCGGAAGACTCAACCTCGAGGGTAATGGTCTTGCCGGT 3674078
Score = 96.9 bits (106), Expect = 4e-15
Identities = 148/206 (72%), Gaps = 4/206 (2%)
Strand=Plus/Plus
Query 42005 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 42064
||||| ||||||||||| ||||| ||||| |||| ||||| || | || || |||||
Sbjct 3673215 ATGCAGAGTGCTCTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCAAGCTG 3673274
Query 42065 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTT 42124
||||||||| || || || || |||||||| | || | | |||||| ||| ||| | |
Sbjct 3673275 CTTACCAGCAAAGATAAGACGTTGCTGGTCAGGAGGAATACCCTCCTTATCC-TGAATCT 3673333
Query 42125 TTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCC 42182
| | |||| ||| | | | || || || || || || | ||||| || |||||
Sbjct 3673334 TCGACTTGA-CGTTGTCGATGGTATCAGAAGACTCAACCTCCAATGTGATCGTCTTGCCG 3673392
Query 42183 GTTAGCGTCTTTACAAAGATTTGCAT 42208
|| || ||||| || || || |||||
Sbjct 3673393 GTGAGGGTCTTGACGAAAATCTGCAT 3673418
Score = 82.4 bits (90), Expect = 8e-11
Identities = 135/192 (70%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077
||||| || || ||||| || | || || || | || || |||||||| || || ||
Sbjct 3673684 TCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAA 3673743
Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137
|| || ||||||||||| | || | || |||||||||| ||| || |||| |||
Sbjct 3673744 ATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGA-CGTT 3673802
Query 42138 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| | | |||||| || || || |||| || ||||| || || || | ||||| ||
Sbjct 3673803 GTCAATAGTGTCGGAAGACTCAACCTCGAGGGTAATGGTCTTTCCGGTCAAAGTCTTGAC 3673862
Query 42197 AAAGATTTGCAT 42208
||||| |||||
Sbjct 3673863 GAAGATCTGCAT 3673874
>seq7
Length=1200748
Score = 86.0 bits (94), Expect = 7e-12
Identities = 136/195 (70%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || ||||| || | || || || | || || |||||||| ||||||||
Sbjct 1041530 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAA 1041471
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
|| || ||||||||||| | || | | |||||| ||| ||| || |||| |
Sbjct 1041470 GATCAGGCGCTGCTGGTCAGGGGGGATACCCTCCTTATCCTGGATCTTGGACTTGACATT 1041411
Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| | |||||| || ||||| || | ||||| || || ||||| || ||||| ||
Sbjct 1041410 GTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTTCCCGTAAGGGTCTTGAC 1041351
Query 42197 AAAGATTTGCATTTT 42211
|| || ||||| ||
Sbjct 1041350 GAAAATCTGCATCTT 1041336
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543212623455840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |