Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Torrubiella_20hemipterigena_20[genbank_20GCA_5F000825705.1_202014- 12-05] 26 sequences; 28,476,206 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1 131 2e-25 seq3 125 7e-24 seq7 93.3 4e-14 >seq1 Length=8525130 Score = 131 bits (144), Expect = 2e-25 Identities = 340/509 (67%), Gaps = 21/509 (4%) Strand=Plus/Plus Query 52338 CGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCCACGCTGGCCGAG 52397 ||||| ||||| | ||||| ||||||||||| | | | | | || | || || Sbjct 3939356 CGCAAGAAGGCCGACTGGGCCCTGAAGTGGATCTCTGACAAGAACTCTACCTTTGCTCAG 3939415 Query 52398 CGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATC 52457 || | || ||||| || |||||||| | || || || || ||||||| ||||| Sbjct 3939416 CGTCTCGTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCTCTGGTGCCTTTGCCTCCATC 3939475 Query 52458 TTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCG 52517 || | | || | | || | |||||||| ||||| ||| ||||||| | || || Sbjct 3939476 TTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCT 3939535 Query 52518 CGCGACGAAGGACTGCACACGGACTTTGCGTGCCT-CT--ACTACAAG----ACGCGCGT 52570 || ||||| || || ||||| |||||||| ||||| || ||| | | || ||| Sbjct 3939536 CGTGACGAGGGTCTTCACACCGACTTTGCCTGCCTTCTGCACTCCCACCTCAACAACCGT 3939595 Query 52571 GACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGA 52630 | | | || ||| || || | | | |||| ||| || || || | || || Sbjct 3939596 GCCAGCAA----GGA---GGTCAT--TGCCG-GCATCATCACTGACGCTGTCACCATTGA 3939645 Query 52631 AAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCAT 52690 ||||||| |||| | || || || || ||||| ||||||||||| | ||| Sbjct 3939646 GCAGGAGTTCCTTACCGAGGCTCTTCCTTGCGCTCTGCTCGGCATGAACGCCAACCTCAT 3939705 Query 52691 GTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCG-GGCAGCCAAAGT 52749 | ||||||| ||||| || || |||||||| | || |||| |||| | | | Sbjct 3939706 GAAGCAGTACATTGAGTTCGTCGCTGATCGTCTCCTCGTC--GCTCTTGGCAACGAGAAG 3939763 Query 52750 ACTT-CAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACC 52808 | || ||| | ||| || || || || ||| | ||||| || |||| ||||||||| Sbjct 3939764 ATTTACAAGTCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGTGGCAAGACC 3939823 Query 52809 AACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||||| ||||||||||| || |||||||| Sbjct 3939824 AACTTCTTCGAGAAGCGTGTTGGCGAGTA 3939852 >seq3 Length=4610873 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||||| || || || | | |||||||| |||||||||||||||||| Sbjct 3673420 CCACCACGGAGACGCAGCACCAAGTGCAGAGTAGACTCCTTCTGAATGTTGTAGTCGCTC 3673479 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||||||| || ||||||| | |||| |||||||| || || ||||| Sbjct 3673480 AGAGTGCGACCGTCCTCGAGCTGCTTACCGGCAAAGATAAGACGCTGCTGATCAGGAGGG 3673539 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || || || ||| ||| || | |||| || | ||||| | ||||| || Sbjct 3673540 ATACCCTCCTTATCTTGGATCTTTGACTTGACATTG-TCGATTGTGTCCGATGACTCAAC 3673598 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||| ||||| || ||||| || ||||| Sbjct 3673599 TTCTAATGTAATAGTCTTGCCAGTAAGAGTCTTGACAAAGATTTGCAT 3673646 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| |||||||||||||| | ||| || || || || || ||||| | | | Sbjct 3673227 CTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCAAGCTGCTTACCAGCAAA 3673286 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--T 138540 ||| ||||| || ||||| ||||| ||||| || || || ||| | || | || | | Sbjct 3673287 GATAAGACGTTGCTGGTCAGGAGGAATACCCTCCTTATC-CTGAATCTTCGACTTGACGT 3673345 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 || || | ||| || | ||||| ||||| | || | ||| || || || || || || Sbjct 3673346 TG-TCGATGGTATCAGAAGACTCAACCTCCAATGTGATCGTCTTGCCGGTGAGGGTCTTG 3673404 Query 138601 ACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 3673405 ACGAAAATCTGCAT 3673418 >seq7 Length=1200748 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || |||||||| || || || | Sbjct 1041532 GACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCG 1041473 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || ||||| ||||| || || ||||| || || || ||| || || | | Sbjct 1041472 AAGATCAGGCGCTGCTGGTCAGGGGGGATACCCTCCTTATCCTGGATCTTGGACTTGACA 1041413 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 |||| | | |||||||| ||||||||||| | || | ||| || || || || || || Sbjct 1041412 TTGT-CAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTTCCCGTAAGGGTCTT 1041354 Query 138600 TACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 1041353 GACGAAAATCTGCAT 1041339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262238714720