Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Torrubiella_20hemipterigena_20[genbank_20GCA_5F000825705.1_202014-
12-05] 26 sequences; 28,476,206 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq1 123 2e-23
seq3 122 8e-23
seq7 98.7 9e-16
>seq1
Length=8525130
Score = 123 bits (136), Expect = 2e-23
Identities = 345/526 (66%), Gaps = 19/526 (4%)
Strand=Plus/Plus
Query 47061 GAGAGCATGCCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAGTACATTGAAAACGAA 47120
|||| ||| ||||| | |||| |||||||| |||||| |||||| || || |
Sbjct 3939338 GAGACCATTCCCTGTATCCGCAAGAAGGCCGACTGGGCCCTGAAGTGGATCTCTGACAAG 3939397
Query 47121 AACGTCACTCTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCG 47180
||| || | || | ||| | | || || || ||||||||| ||||||||||
Sbjct 3939398 AACTCTACCTTTGCTCAGCGTCTCGTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCTCT 3939457
Query 47181 GGCAGCTTTGCGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTT 47240
|| |||||| | || || | | || | || | |||||||| || || ||
Sbjct 3939458 GGTGCCTTTGCCTCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTGACCTTC 3939517
Query 47241 AGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCT-CT--AC 47297
||||||||| ||||| | ||||| || || |||||| |||||||||| || || ||
Sbjct 3939518 TCCAACGAGCTCATCTCTCGTGACGAGGGTCTTCACACCGACTTTGCCTGCCTTCTGCAC 3939577
Query 47298 TACAAC----ACTAGAGT-CGATCAAAAGTTGGACGTGCCCACCGTCAGCGACATGTTTG 47352
| | || || | || | | ||| ||| || ||| || | ||
Sbjct 3939578 TCCCACCTCAACAACCGTGCCAGCAA-----GGAGGTCATTGCCGGCATCATCA------ 3939626
Query 47353 CCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGG 47412
| || || ||| |||||||| |||||| | |||||||||| || || | | |
Sbjct 3939627 CTGACGCTGTCACCATTGAGCAGGAGTTCCTTACCGAGGCTCTTCCTTGCGCTCTGCTCG 3939686
Query 47413 GAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTC 47472
| |||||||| | | |||| ||||||| || || ||||| || || || |||||
Sbjct 3939687 GCATGAACGCCAACCTCATGAAGCAGTACATTGAGTTCGTCGCTGATCGTCTCCTCGTCG 3939746
Query 47473 AGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTT 47532
|| | ||||||||| | || || || ||||| || ||| | ||||| |
Sbjct 3939747 CTCTTGGCAACGAGAAGATTTACAAGTCCACCAACCCCTTCGACTTCATGGAGAACATCT 3939806
Query 47533 CGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578
| || | |||||||||||||| ||||||||||| || ||||| ||
Sbjct 3939807 CCCTTGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGCGAGTA 3939852
Score = 95.1 bits (104), Expect = 1e-14
Identities = 129/180 (72%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985
|| || || ||||| ||| | ||||| ||| || ||||| || |||||| |||||
Sbjct 1348136 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATC 1348077
Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045
| |||||||| || || || ||||||||||| ||| ||| || ||||| | |||
Sbjct 1348076 AGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTATCCTGGATCTTGGACTTGACATTGTCG 1348017
Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105
| |||||||| |||||| |||| ||| | || || || ||||| || || || |||
Sbjct 1348016 ATGGTGTCCGAGGACTCGACCTCGAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAAA 1347957
>seq3
Length=4610873
Score = 122 bits (134), Expect = 8e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | |||| |||||| || | |||||||| || ||||| ||||| |||| |
Sbjct 3673420 CCACCACGGAGACGCAGCACCAAGTGCAGAGTAGACTCCTTCTGAATGTTGTAGTCGCTC 3673479
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| |||||| || || ||||| || || || |||| | ||||||||||| |||||
Sbjct 3673480 AGAGTGCGACCGTCCTCGAGCTGCTTACCGGCAAAGATAAGACGCTGCTGATCAGGAGGG 3673539
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
|| |||||||| || ||| || ||||| | |||| ||||||| ||| |||
Sbjct 3673540 ATACCCTCCTTATCTTGGATCTTTGACTTGACATTGTCGATTGTGTCCGATGACTCAACT 3673599
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | || | || ||||| || ||||| || ||||| || |||||
Sbjct 3673600 TCTAATGTAATAGTCTTGCCAGTAAGAGTCTTGACAAAGATTTGCAT 3673646
Score = 107 bits (118), Expect = 2e-18
Identities = 144/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
||||| || || || || ||||| ||| | ||||| ||| || ||||| || ||
Sbjct 3673678 GTAGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCTTCAAGCTGCTTGCCG 3673737
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
|| | |||| |||||||| || ||||| ||||||||||||||| ||| ||| ||||
Sbjct 3673738 GCAAAAATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTCGACTTG 3673797
Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095
| |||| || | ||||| | | ||| || |||| ||| | || || ||||||| |||
Sbjct 3673798 ACGTTG-TCAATAGTGTCGGAAGACTCAACCTCGAGGGTAATGGTCTTTCCGGTCAAAGT 3673856
Query 127096 TTTTACAAAAATCTGCAT 127113
|| || || ||||||||
Sbjct 3673857 CTTGACGAAGATCTGCAT 3673874
Score = 93.3 bits (102), Expect = 4e-14
Identities = 138/193 (72%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981
||| || ||||| ||||| || | ||||| ||| || ||||| || ||||| |
Sbjct 3673227 CTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCAAGCTGCTTACCAGCAAA 3673286
Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTT 127040
||| | || ||||| || ||||| || |||||||| ||| || ||| ||||| |||
Sbjct 3673287 GATAAGACGTTGCTGGTCAGGAGGAATACCCTCCTTATCCTGAATCTTCGACTTGACGTT 3673346
Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100
|| ||| ||| || | | ||| || || | || | ||| |||||||| || || || |
Sbjct 3673347 GT-CGATGGTATCAGAAGACTCAACCTCCAATGTGATCGTCTTGCCGGTGAGGGTCTTGA 3673405
Query 127101 CAAAAATCTGCAT 127113
| |||||||||||
Sbjct 3673406 CGAAAATCTGCAT 3673418
Score = 86.0 bits (94), Expect = 6e-12
Identities = 122/169 (72%), Gaps = 2/169 (1%)
Strand=Plus/Plus
Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981
||| || ||||| |||||||| | ||||| ||| || ||||| || |||||| |
Sbjct 3673911 CTCCTTCTGAATGTTGTAATCAGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAA 3673970
Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTT 127040
|||| |||||||| || || || || |||||||||||| || || ||||| |||
Sbjct 3673971 AATCAGGCGCTGCTGGTCAGGGGGAATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTT 3674030
Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGT 127089
| || | |||||| | | ||| || |||| ||| | || ||||||||
Sbjct 3674031 G-TCAATGGTGTCGGAAGACTCAACCTCGAGGGTAATGGTCTTGCCGGT 3674078
>seq7
Length=1200748
Score = 98.7 bits (108), Expect = 9e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || || || ||||| ||| | ||||| ||| || ||||| || |||
Sbjct 1041535 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCA 1041476
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| |||||| |||||||| || || || || |||||||| ||| ||| || ||||
Sbjct 1041475 GCGAAGATCAGGCGCTGCTGGTCAGGGGGGATACCCTCCTTATCCTGGATCTTGGACTTG 1041416
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | || | |||||| | | ||| || || | ||| | ||| || || || || ||
Sbjct 1041415 ACATTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTTCCCGTAAGGGTC 1041356
Query 127097 TTTACAAAAATCTGCAT 127113
|| || |||||||||||
Sbjct 1041355 TTGACGAAAATCTGCAT 1041339
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475500645462240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |