Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Torrubiella_20hemipterigena_20[genbank_20GCA_5F000825705.1_202014-
12-05] 26 sequences; 28,476,206 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq1 224 1e-53
seq7 107 2e-18
seq3 104 2e-17
>seq1
Length=8525130
Score = 224 bits (248), Expect = 1e-53
Identities = 599/904 (66%), Gaps = 25/904 (3%)
Strand=Plus/Minus
Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGC 132663
|| || || ||||| || ||||| || || || || || || | | ||| ||| |
Sbjct 3939858 TTCTGGTACTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTC 3939799
Query 132664 GTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACG 132720
||| || || |||||||||| | ||||| ||| | |||| | || |||||
Sbjct 3939798 TCCATGAAGTCGAAGGGGTTGGTGGACTTGTAAATCTTCTCGTTGCCAAG-AG--CGACG 3939742
Query 132721 AGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAG 132779
|| || | || || |||||||| ||||| ||| |||| | || || | | | || ||
Sbjct 3939741 AGGAGACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTTGGCGTTCATG-CCGAG 3939683
Query 132780 CAGA-CGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGA 132838
|||| |||| || || || ||||| || || ||||| |||| ||| ||||| ||||
Sbjct 3939682 CAGAGCGCAA-GGAAGAGCCTCGGTAAGGAACTCCTGCTCAATGGTGACAGCGTCAGTGA 3939624
Query 132839 CGATTTCCCTAACGCGCGCCGCGCT----CGGCCGTTGCACCAAATGCTTGAACATCAAG 132894
||| | || | | || ||| ||| |||| | || | || | |
Sbjct 3939623 TGATGCCGGCAATGACCTCCTTGCTGGCACGGTTGTTG----AGGTGGGAGTGCAGAAGG 3939568
Query 132895 CAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAG 132954
|| ||||||||| || | |||||||| | || ||||| |||||| ||| ||||
Sbjct 3939567 CAGGCAAAGTCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGA 3939508
Query 132955 CCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAG 133014
||||||||||| ||||| || |||||||| || |||| ||| || || || ||||||
Sbjct 3939507 CCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCAGAGAAGAAG 3939448
Query 133015 ACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCG 133074
| ||||||||||| || || || || || |||| | || || | | ||| | |
Sbjct 3939447 ATACCCTCGACGGCAGCAAAGGCAACGAGACGCTGAGCAAAGGTAGAGTTCTTGTCAGAG 3939388
Query 133075 ATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTC 133134
||||| ||| ||||| |||||||| | || || || || || || ||||||||
Sbjct 3939387 ATCCACTTCAGGGCCCAGTCGGCCTTCTTGCGGATACAGGGAATGGTCTCAATGGCGTTG 3939328
Query 133135 AACAAACGGAGTTTCTCTTCCGAGGAAC--GCACGTAGGTGTCGATGAGGGTCGAATACA 133192
| | | | | | | || ||| | |||||||| || || || || ||
Sbjct 3939327 A--AGAGGTATGTGCGCTGGGTAGGCTCCTTGACGTAGGTATCAATAAGCAGGGAGTATG 3939270
Query 133193 TTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCA 133252
| || ||||| | ||||||||| ||| || || ||||| ||||| || ||||| |
Sbjct 3939269 TCTCAGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAGCGACCCTCGGGAA 3939210
Query 133253 CCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGG 133312
||| || || | | ||| ||||||| || || ||||| || || ||||| |||||
Sbjct 3939209 TCTGGACCTCGTTGGAGAAGCGCTCGAGAAGGTTCTCGTTAACAATACCGTCAGAGGCGG 3939150
Query 133313 CGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG---CTCCC 133369
| || ||||| || | ||| |||||| | ||||| ||||| | || | ||
Sbjct 3939149 CAAAGAAGGCAAGAATGTGGGAGATGAAGTATTTCTCGTCATCGTTGAGACGGTTGTTCC 3939090
Query 133370 AGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTT 133429
| ||| || |||||||| || || | || ||| | ||||| || || |||||||| |
Sbjct 3939089 AATCGTGCAGATCCTTGGAAAGATCGATTTCTTCGGCTGTCCAGAATGAGGCCTCGGCCT 3939030
Query 133430 TTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGT 133489
| |||||||| ||| || || || | ||||| || | || || ||| |||||
Sbjct 3939029 TCTTGTACATCTGCCAGATCTCGTGGTACTTGATGGGGAAGAGAACGAAGCGGTTGGGGT 3938970
Query 133490 TTTC 133493
| ||
Sbjct 3938969 TCTC 3938966
Score = 111 bits (122), Expect = 2e-19
Identities = 133/181 (73%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || || ||||| || ||||| ||| |||| |||||| || | |||| | |
Sbjct 1347958 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTCGAGGTCGAGTCCTCGGACACCATC 1348017
Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372
| | | || || |||| || || ||||| |||||| | ||||| ||||| ||
Sbjct 1348018 GACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGCATTCCCCCTGACCAGCAGCGCCTG 1348077
Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432
|| | ||| ||||| ||||| || || | ||||||||| ||||||||||||||| |||
Sbjct 1348078 ATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAAG 1348137
Query 38433 G 38433
|
Sbjct 1348138 G 1348138
>seq7
Length=1200748
Score = 107 bits (118), Expect = 2e-18
Identities = 140/194 (72%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|| ||||| || ||||| || || || ||||| || || |||||| | || || ||| |
Sbjct 1041336 AAGATGCAGATTTTCGTCAAGACCCTTACGGGAAAGACGATCACCCTTGAGGTGGAGTCT 1041395
Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360
|||||| | | | | | || || |||| || || ||||| || ||| | |||
Sbjct 1041396 TCCGACACCATTGACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGTATCCCCCCTGAC 1041455
Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420
|| ||||| || || | ||| ||||| ||||| || || | ||||||||| |||||||
Sbjct 1041456 CAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTAC 1041515
Query 38421 AACATCCAAAAGGA 38434
|||||||| |||||
Sbjct 1041516 AACATCCAGAAGGA 1041529
>seq3
Length=4610873
Score = 104 bits (114), Expect = 2e-17
Identities = 154/216 (71%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || | || || || ||||| ||| |||| || ||| | ||
Sbjct 3673874 ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACCATTACCCTCGAGGTTGAGTCTTCC 3673815
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | |||| | || || |||| ||||| ||||| || || | |||||
Sbjct 3673814 GACACTATTGACAACG-TCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCTCCTGACCA 3673756
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| || |||| || ||||| ||||| || || | |||||||| |||||||||
Sbjct 3673755 GCAGCGCCTGATTTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTTTCCGACTACAA 3673696
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
|||||| |||||| | || || ||| | || || ||
Sbjct 3673695 CATCCAGAAGGAATCTACCCTTCATCTCGTTCTCCG 3673660
Score = 102 bits (112), Expect = 8e-17
Identities = 126/170 (74%), Gaps = 2/170 (1%)
Strand=Plus/Minus
Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324
|||| ||||| ||||| ||| |||| || ||| | |||||| | | | |||| | ||
Sbjct 3674080 TCACCGGCAAGACCATTACCCTCGAGGTTGAGTCTTCCGACACCATTGACAACG-TCAAG 3674022
Query 38325 GAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGC 38384
|| || | ||||| |||||||||||| | ||||| ||||| || |||| ||| |||
Sbjct 3674021 TCCAAGATTCAGGACAAGGAGGGAATTCCCCCTGACCAGCAGCGCCTGATTTTCGCTGGC 3673962
Query 38385 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA 38434
|| ||||| || || | ||||||||| || |||||||| || |||||
Sbjct 3673961 AAGCAGCTCGAGGATGGCCGCACCCTCTCTGATTACAACATTCAGAAGGA 3673912
Score = 93.3 bits (102), Expect = 4e-14
Identities = 150/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| || || || || || || ||||| || || || | || || ||| | |
Sbjct 3673646 ATGCAAATCTTTGTCAAGACTCTTACTGGCAAGACTATTACATTAGAAGTTGAGTCATCG 3673587
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | || ||| |||| || || ||||| || || | || ||
Sbjct 3673586 GACACAATCGACAATGTCAAGTCAAAGATCCAAGATAAGGAGGGTATCCCTCCTGATCAG 3673527
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || || | || || || ||||| || |||| ||||| || | ||||||||||
Sbjct 3673526 CAGCGTCTTATCTTTGCCGGTAAGCAGCTCGAGGACGGTCGCACTCTGAGCGACTACAAC 3673467
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
|| || ||||| | || ||||| ||||||||||||
Sbjct 3673466 ATTCAGAAGGAGTCTACTCTGCACTTGGTGCTGCGT 3673431
Score = 82.4 bits (90), Expect = 8e-11
Identities = 160/231 (69%), Gaps = 4/231 (2%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || ||||| ||||| || ||||| | || || ||| | |
Sbjct 3673418 ATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACGATCACATTGGAGGTTGAGTCTTCT 3673359
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|| | | | | |||| | || || || | || || ||||| ||||| | |||||
Sbjct 3673358 GATACCATCGACAACG-TCAAGTCGAAGATTCAGGATAAGGAGGGTATTCCTCCTGACCA 3673300
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
|| || || || | || || || ||||| || || | ||||| ||| ||||||||
Sbjct 3673299 GCAACGTCTTATCTTTGCTGGTAAGCAGCTTGAAGATGGCCGCACTCTCTCTGACTACAA 3673240
Query 38423 CATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472
||| || ||||| ||| || |||||| | || || ||| || | || ||||
Sbjct 3673239 CATTCAGAAGGAGAGC-ACTCTGCATCTCGTCCTCCGTCTGCGCGGTGGCC 3673190
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500172637443840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |