Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Torrubiella_20hemipterigena_20[genbank_20GCA_5F000825705.1_202014- 12-05] 26 sequences; 28,476,206 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1 224 1e-53 seq7 107 2e-18 seq3 104 2e-17 >seq1 Length=8525130 Score = 224 bits (248), Expect = 1e-53 Identities = 599/904 (66%), Gaps = 25/904 (3%) Strand=Plus/Minus Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGC 132663 || || || ||||| || ||||| || || || || || || | | ||| ||| | Sbjct 3939858 TTCTGGTACTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTC 3939799 Query 132664 GTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACG 132720 ||| || || |||||||||| | ||||| ||| | |||| | || ||||| Sbjct 3939798 TCCATGAAGTCGAAGGGGTTGGTGGACTTGTAAATCTTCTCGTTGCCAAG-AG--CGACG 3939742 Query 132721 AGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAG 132779 || || | || || |||||||| ||||| ||| |||| | || || | | | || || Sbjct 3939741 AGGAGACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTTGGCGTTCATG-CCGAG 3939683 Query 132780 CAGA-CGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGA 132838 |||| |||| || || || ||||| || || ||||| |||| ||| ||||| |||| Sbjct 3939682 CAGAGCGCAA-GGAAGAGCCTCGGTAAGGAACTCCTGCTCAATGGTGACAGCGTCAGTGA 3939624 Query 132839 CGATTTCCCTAACGCGCGCCGCGCT----CGGCCGTTGCACCAAATGCTTGAACATCAAG 132894 ||| | || | | || ||| ||| |||| | || | || | | Sbjct 3939623 TGATGCCGGCAATGACCTCCTTGCTGGCACGGTTGTTG----AGGTGGGAGTGCAGAAGG 3939568 Query 132895 CAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAG 132954 || ||||||||| || | |||||||| | || ||||| |||||| ||| |||| Sbjct 3939567 CAGGCAAAGTCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGA 3939508 Query 132955 CCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAG 133014 ||||||||||| ||||| || |||||||| || |||| ||| || || || |||||| Sbjct 3939507 CCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCAGAGAAGAAG 3939448 Query 133015 ACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCG 133074 | ||||||||||| || || || || || |||| | || || | | ||| | | Sbjct 3939447 ATACCCTCGACGGCAGCAAAGGCAACGAGACGCTGAGCAAAGGTAGAGTTCTTGTCAGAG 3939388 Query 133075 ATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTC 133134 ||||| ||| ||||| |||||||| | || || || || || || |||||||| Sbjct 3939387 ATCCACTTCAGGGCCCAGTCGGCCTTCTTGCGGATACAGGGAATGGTCTCAATGGCGTTG 3939328 Query 133135 AACAAACGGAGTTTCTCTTCCGAGGAAC--GCACGTAGGTGTCGATGAGGGTCGAATACA 133192 | | | | | | | || ||| | |||||||| || || || || || Sbjct 3939327 A--AGAGGTATGTGCGCTGGGTAGGCTCCTTGACGTAGGTATCAATAAGCAGGGAGTATG 3939270 Query 133193 TTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCA 133252 | || ||||| | ||||||||| ||| || || ||||| ||||| || ||||| | Sbjct 3939269 TCTCAGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAGCGACCCTCGGGAA 3939210 Query 133253 CCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGG 133312 ||| || || | | ||| ||||||| || || ||||| || || ||||| ||||| Sbjct 3939209 TCTGGACCTCGTTGGAGAAGCGCTCGAGAAGGTTCTCGTTAACAATACCGTCAGAGGCGG 3939150 Query 133313 CGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG---CTCCC 133369 | || ||||| || | ||| |||||| | ||||| ||||| | || | || Sbjct 3939149 CAAAGAAGGCAAGAATGTGGGAGATGAAGTATTTCTCGTCATCGTTGAGACGGTTGTTCC 3939090 Query 133370 AGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTT 133429 | ||| || |||||||| || || | || ||| | ||||| || || |||||||| | Sbjct 3939089 AATCGTGCAGATCCTTGGAAAGATCGATTTCTTCGGCTGTCCAGAATGAGGCCTCGGCCT 3939030 Query 133430 TTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGT 133489 | |||||||| ||| || || || | ||||| || | || || ||| ||||| Sbjct 3939029 TCTTGTACATCTGCCAGATCTCGTGGTACTTGATGGGGAAGAGAACGAAGCGGTTGGGGT 3938970 Query 133490 TTTC 133493 | || Sbjct 3938969 TCTC 3938966 Score = 111 bits (122), Expect = 2e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || ||||| || ||||| ||| |||| |||||| || | |||| | | Sbjct 1347958 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTCGAGGTCGAGTCCTCGGACACCATC 1348017 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| || || ||||| |||||| | ||||| ||||| || Sbjct 1348018 GACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGCATTCCCCCTGACCAGCAGCGCCTG 1348077 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| ||||| ||||| || || | ||||||||| ||||||||||||||| ||| Sbjct 1348078 ATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAAG 1348137 Query 38433 G 38433 | Sbjct 1348138 G 1348138 >seq7 Length=1200748 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || || ||||| || || |||||| | || || ||| | Sbjct 1041336 AAGATGCAGATTTTCGTCAAGACCCTTACGGGAAAGACGATCACCCTTGAGGTGGAGTCT 1041395 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 |||||| | | | | | || || |||| || || ||||| || ||| | ||| Sbjct 1041396 TCCGACACCATTGACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGTATCCCCCCTGAC 1041455 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| || || | ||| ||||| ||||| || || | ||||||||| ||||||| Sbjct 1041456 CAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTAC 1041515 Query 38421 AACATCCAAAAGGA 38434 |||||||| ||||| Sbjct 1041516 AACATCCAGAAGGA 1041529 >seq3 Length=4610873 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || || || ||||| ||| |||| || ||| | || Sbjct 3673874 ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACCATTACCCTCGAGGTTGAGTCTTCC 3673815 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || || |||| ||||| ||||| || || | ||||| Sbjct 3673814 GACACTATTGACAACG-TCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCTCCTGACCA 3673756 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || |||| || ||||| ||||| || || | |||||||| ||||||||| Sbjct 3673755 GCAGCGCCTGATTTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTTTCCGACTACAA 3673696 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| |||||| | || || ||| | || || || Sbjct 3673695 CATCCAGAAGGAATCTACCCTTCATCTCGTTCTCCG 3673660 Score = 102 bits (112), Expect = 8e-17 Identities = 126/170 (74%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324 |||| ||||| ||||| ||| |||| || ||| | |||||| | | | |||| | || Sbjct 3674080 TCACCGGCAAGACCATTACCCTCGAGGTTGAGTCTTCCGACACCATTGACAACG-TCAAG 3674022 Query 38325 GAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGC 38384 || || | ||||| |||||||||||| | ||||| ||||| || |||| ||| ||| Sbjct 3674021 TCCAAGATTCAGGACAAGGAGGGAATTCCCCCTGACCAGCAGCGCCTGATTTTCGCTGGC 3673962 Query 38385 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA 38434 || ||||| || || | ||||||||| || |||||||| || ||||| Sbjct 3673961 AAGCAGCTCGAGGATGGCCGCACCCTCTCTGATTACAACATTCAGAAGGA 3673912 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || || || ||||| || || || | || || ||| | | Sbjct 3673646 ATGCAAATCTTTGTCAAGACTCTTACTGGCAAGACTATTACATTAGAAGTTGAGTCATCG 3673587 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || ||| |||| || || ||||| || || | || || Sbjct 3673586 GACACAATCGACAATGTCAAGTCAAAGATCCAAGATAAGGAGGGTATCCCTCCTGATCAG 3673527 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | || || || ||||| || |||| ||||| || | |||||||||| Sbjct 3673526 CAGCGTCTTATCTTTGCCGGTAAGCAGCTCGAGGACGGTCGCACTCTGAGCGACTACAAC 3673467 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 || || ||||| | || ||||| |||||||||||| Sbjct 3673466 ATTCAGAAGGAGTCTACTCTGCACTTGGTGCTGCGT 3673431 Score = 82.4 bits (90), Expect = 8e-11 Identities = 160/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| || ||||| | || || ||| | | Sbjct 3673418 ATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACGATCACATTGGAGGTTGAGTCTTCT 3673359 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || || || | || || ||||| ||||| | ||||| Sbjct 3673358 GATACCATCGACAACG-TCAAGTCGAAGATTCAGGATAAGGAGGGTATTCCTCCTGACCA 3673300 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || || || | || || || ||||| || || | ||||| ||| |||||||| Sbjct 3673299 GCAACGTCTTATCTTTGCTGGTAAGCAGCTTGAAGATGGCCGCACTCTCTCTGACTACAA 3673240 Query 38423 CATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 ||| || ||||| ||| || |||||| | || || ||| || | || |||| Sbjct 3673239 CATTCAGAAGGAGAGC-ACTCTGCATCTCGTCCTCCGTCTGCGCGGTGGCC 3673190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172637443840