Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Torrubiella_20hemipterigena_20[genbank_20GCA_5F000825705.1_202014- 12-05] 26 sequences; 28,476,206 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq3 118 7e-22 >seq3 Length=4610873 Score = 118 bits (130), Expect = 7e-22 Identities = 142/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| |||||| | || |||| || ||||| || |||||||| Sbjct 3673683 TTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAA 3673742 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || |||||||| | || | ||||||||||| |||||| |||||| Sbjct 3673743 AATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTT 3673802 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | || | |||||| |||| ||| ||||| ||||| || | |||||| || Sbjct 3673803 GTCAATAGTGTCGGAAGACTCAACCTCGAGGGTAATGGTCTTTCCGGTCAAAGTCTTGAC 3673862 Query 34970 AAAGATCTGCATA 34982 |||||||||||| Sbjct 3673863 GAAGATCTGCATA 3673875 Score = 105 bits (116), Expect = 4e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844 ||||| || ||||||||||| ||||| || || | || |||| || ||||| || || Sbjct 3673222 GTGCTCTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCAAGCTGCTTACCA 3673281 Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904 ||||| || || ||||||||||| | || | |||||||| || ||||||| ||| Sbjct 3673282 GCAAAGATAAGACGTTGCTGGTCAGGAGGAATACCCTCCTTATCCTGAATCTTCGACTTG 3673341 Query 34905 ACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTC 34964 ||| | || | ||| | |||||| || | || || || || || ||||| ||| Sbjct 3673342 ACGTTGTCGATGGTATCAGAAGACTCAACCTCCAATGTGATCGTCTTGCCGGTGAGGGTC 3673401 Query 34965 TTCACAAAGATCTGCATA 34982 || || || ||||||||| Sbjct 3673402 TTGACGAAAATCTGCATA 3673419 Score = 82.4 bits (90), Expect = 5e-11 Identities = 123/175 (70%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844 ||||| || ||||||||||| || || || ||| | || |||| || ||||| || || Sbjct 3673906 GTGCTCTCCTTCTGAATGTTGTAATCAGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCA 3673965 Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904 || || || || || |||||||| | || | ||||||||||| |||||| ||| Sbjct 3673966 GCGAAAATCAGGCGCTGCTGGTCAGGGGGAATTCCCTCCTTGTCCTGAATCTTGGACTTG 3674025 Query 34905 ACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGA 34959 ||| | || | || | |||||| |||| ||| ||||| || || |||| Sbjct 3674026 ACGTTGTCAATGGTGTCGGAAGACTCAACCTCGAGGGTAATGGTCTTGCCGGTGA 3674080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633497131728