Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Torrubiella_20hemipterigena_20[genbank_20GCA_5F000825705.1_202014-
12-05] 26 sequences; 28,476,206 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq3 118 7e-22
>seq3
Length=4610873
Score = 118 bits (130), Expect = 7e-22
Identities = 142/193 (74%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849
||| ||||| ||||| ||||| |||||| | || |||| || ||||| || ||||||||
Sbjct 3673683 TTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAA 3673742
Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909
|| || || |||||||| | || | ||||||||||| |||||| ||||||
Sbjct 3673743 AATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTT 3673802
Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969
| || | || | |||||| |||| ||| ||||| ||||| || | |||||| ||
Sbjct 3673803 GTCAATAGTGTCGGAAGACTCAACCTCGAGGGTAATGGTCTTTCCGGTCAAAGTCTTGAC 3673862
Query 34970 AAAGATCTGCATA 34982
||||||||||||
Sbjct 3673863 GAAGATCTGCATA 3673875
Score = 105 bits (116), Expect = 4e-18
Identities = 142/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844
||||| || ||||||||||| ||||| || || | || |||| || ||||| || ||
Sbjct 3673222 GTGCTCTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCAAGCTGCTTACCA 3673281
Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904
||||| || || ||||||||||| | || | |||||||| || ||||||| |||
Sbjct 3673282 GCAAAGATAAGACGTTGCTGGTCAGGAGGAATACCCTCCTTATCCTGAATCTTCGACTTG 3673341
Query 34905 ACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTC 34964
||| | || | ||| | |||||| || | || || || || || ||||| |||
Sbjct 3673342 ACGTTGTCGATGGTATCAGAAGACTCAACCTCCAATGTGATCGTCTTGCCGGTGAGGGTC 3673401
Query 34965 TTCACAAAGATCTGCATA 34982
|| || || |||||||||
Sbjct 3673402 TTGACGAAAATCTGCATA 3673419
Score = 82.4 bits (90), Expect = 5e-11
Identities = 123/175 (70%), Gaps = 0/175 (0%)
Strand=Plus/Plus
Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844
||||| || ||||||||||| || || || ||| | || |||| || ||||| || ||
Sbjct 3673906 GTGCTCTCCTTCTGAATGTTGTAATCAGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCA 3673965
Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904
|| || || || || |||||||| | || | ||||||||||| |||||| |||
Sbjct 3673966 GCGAAAATCAGGCGCTGCTGGTCAGGGGGAATTCCCTCCTTGTCCTGAATCTTGGACTTG 3674025
Query 34905 ACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGA 34959
||| | || | || | |||||| |||| ||| ||||| || || ||||
Sbjct 3674026 ACGTTGTCAATGGTGTCGGAAGACTCAACCTCGAGGGTAATGGTCTTGCCGGTGA 3674080
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324633497131728
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |