Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Torrubiella_20hemipterigena_20[genbank_20GCA_5F000825705.1_202014-
12-05] 26 sequences; 28,476,206 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq3 98.7 8e-15
seq2 87.8 1e-11
>seq3
Length=4610873
Score = 98.7 bits (108), Expect = 8e-15
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316
|||||||| || ||||| || || || || || ||| ||||| |||| ||||| |
Sbjct 3673201 AGACGGAGGACGAGATGCAGAGTGCTCTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGG 3673260
Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376
||||||||| || || || ||||| ||||| | |||||| ||||||||||| || ||
Sbjct 3673261 CCATCTTCAAGCTGCTTACCAGCAAAGATAAGACGTTGCTGGTCAGGAGGAATACCCTCC 3673320
Query 563377 TTATCTTGAATTTT 563390
||||| ||||| ||
Sbjct 3673321 TTATCCTGAATCTT 3673334
Score = 89.7 bits (98), Expect = 4e-12
Identities = 156/222 (70%), Gaps = 4/222 (2%)
Strand=Plus/Plus
Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCT-AGAGTTC 563314
|||||| || || | || || ||| || || ||| ||||| || ||| ||||| |
Sbjct 3673428 GAGACGCAGCACCAAGTGCAGAGTAGACTCCTTCTGAATGTTGTAGTC-GCTCAGAGTGC 3673486
Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374
|| || || || || |||||||| ||||| | |||||||||||||| || || |
Sbjct 3673487 GACCGTCCTCGAGCTGCTTACCGGCAAAGATAAGACGCTGCTGATCAGGAGGGATACCCT 3673546
Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAGA 563433
| |||||||| || ||| || || || ||||| || | ||| | | ||| |
Sbjct 3673547 CCTTATCTTGGATCTTTGACTTGACATTGTCGATTGTGTCCG-ATGACTCAACTTCTAAT 3673605
Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475
|||| ||| || ||||||||||| || || || |||||||||
Sbjct 3673606 GTAATAGTCTTGCCAGTAAGAGTCTTGACAAAGATTTGCATA 3673647
>seq2
Length=6006343
Score = 87.8 bits (96), Expect = 1e-11
Identities = 77/96 (80%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 390916 TGGATATAACCAGTGTCTGCAGTTTTAATTGCAGTATTAATAATACCTTCTCTTCCTGCC 390975
||||| |||||||| ||||||||||||| |||||||| ||| | ||||||||| || |||
Sbjct 4337626 TGGATGTAACCAGTTTCTGCAGTTTTAACTGCAGTATCAATGAGACCTTCTCTACCGGCC 4337685
Query 390976 ATAACTTGGAAGAAAAATTCCATAGGATTGAGTCCA 391011
|| | |||||||| || || ||| |||| |||
Sbjct 4337686 ATGGCGTGGAAGAAGAACTCGGATGGAGTGAGACCA 4337721
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029294625002740
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |