Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Torrubiella_20hemipterigena_20[genbank_20GCA_5F000825705.1_202014- 12-05] 26 sequences; 28,476,206 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq3 98.7 8e-15 seq2 87.8 1e-11 >seq3 Length=4610873 Score = 98.7 bits (108), Expect = 8e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 |||||||| || ||||| || || || || || ||| ||||| |||| ||||| | Sbjct 3673201 AGACGGAGGACGAGATGCAGAGTGCTCTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGG 3673260 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||||||||| || || || ||||| ||||| | |||||| ||||||||||| || || Sbjct 3673261 CCATCTTCAAGCTGCTTACCAGCAAAGATAAGACGTTGCTGGTCAGGAGGAATACCCTCC 3673320 Query 563377 TTATCTTGAATTTT 563390 ||||| ||||| || Sbjct 3673321 TTATCCTGAATCTT 3673334 Score = 89.7 bits (98), Expect = 4e-12 Identities = 156/222 (70%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCT-AGAGTTC 563314 |||||| || || | || || ||| || || ||| ||||| || ||| ||||| | Sbjct 3673428 GAGACGCAGCACCAAGTGCAGAGTAGACTCCTTCTGAATGTTGTAGTC-GCTCAGAGTGC 3673486 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 || || || || || |||||||| ||||| | |||||||||||||| || || | Sbjct 3673487 GACCGTCCTCGAGCTGCTTACCGGCAAAGATAAGACGCTGCTGATCAGGAGGGATACCCT 3673546 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAGA 563433 | |||||||| || ||| || || || ||||| || | ||| | | ||| | Sbjct 3673547 CCTTATCTTGGATCTTTGACTTGACATTGTCGATTGTGTCCG-ATGACTCAACTTCTAAT 3673605 Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 |||| ||| || ||||||||||| || || || ||||||||| Sbjct 3673606 GTAATAGTCTTGCCAGTAAGAGTCTTGACAAAGATTTGCATA 3673647 >seq2 Length=6006343 Score = 87.8 bits (96), Expect = 1e-11 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 390916 TGGATATAACCAGTGTCTGCAGTTTTAATTGCAGTATTAATAATACCTTCTCTTCCTGCC 390975 ||||| |||||||| ||||||||||||| |||||||| ||| | ||||||||| || ||| Sbjct 4337626 TGGATGTAACCAGTTTCTGCAGTTTTAACTGCAGTATCAATGAGACCTTCTCTACCGGCC 4337685 Query 390976 ATAACTTGGAAGAAAAATTCCATAGGATTGAGTCCA 391011 || | |||||||| || || ||| |||| ||| Sbjct 4337686 ATGGCGTGGAAGAAGAACTCGGATGGAGTGAGACCA 4337721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029294625002740