Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Torrubiella_20hemipterigena_20[genbank_20GCA_5F000825705.1_202014- 12-05] 26 sequences; 28,476,206 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq3 89.7 4e-13 seq2 86.0 5e-12 >seq3 Length=4610873 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || |||||||| || ||||| ||||| ||||| ||| | || | || || | ||| Sbjct 3673215 ATGCAGAGTGCTCTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCAAGCTG 3673274 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 |||||| ||||| || || || || || || | |||| |||||||| || |||||| Sbjct 3673275 CTTACCAGCAAAGATAAGACGTTGCTGGTCAGGAGGAATACCCTCCTTATCCTGAATCTT 3673334 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 || || | | | || || | ||| ||||||| || ||||| || || || Sbjct 3673335 CGACTTGACGTTGTCGATGGTATCAGAAGACTCAACCTCCAATGTGATCGTCTTGCCGGT 3673394 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 | || || || ||||||||||| Sbjct 3673395 GAGGGTCTTGACGAAAATCTGCAT 3673418 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| |||||| || || || ||| || ||||| ||||| || ||| | ||| Sbjct 3673429 AGACGCAGCACCAAGTGCAGAGTAGACTCCTTCTGAATGTTGTAGTCGCTCAGAGTGCGA 3673488 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | ||||||||||||||| || || ||||| ||||| | || | |||||| Sbjct 3673489 CCGTCCTCGAGCTGCTTACCGGCAAAGATAAGACGCTGCTGATCAGGAGGGATACCCTCC 3673548 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || |||||| || ||| | | | || || | ||| || || | ||| Sbjct 3673549 TTATCTTGGATCTTTGACTTGACATTGTCGATTGTGTCCGATGACTCAACTTCTAATGTA 3673608 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | ||| || ||||| || ||||| Sbjct 3673609 ATAGTCTTGCCAGTAAGAGTCTTGACAAAGATTTGCAT 3673646 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || || || ||||| || || || | || | || || | |||||| |||||||| Sbjct 3673684 TCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAA 3673743 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 ||||| ||||| || || | || | |||||||||||| ||||| || || Sbjct 3673744 ATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTG 3673803 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | || || || | ||| ||||| | ||||| || ||||| |||||||| || || Sbjct 3673804 TCAATAGTGTCGGAAGACTCAACCTCGAGGGTAATGGTCTTTCCGGTCAAAGTCTTGACG 3673863 Query 48756 AAAATCTGCAT 48766 || |||||||| Sbjct 3673864 AAGATCTGCAT 3673874 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || |||||||| || ||||| ||||||||||| || | || | || || | |||| Sbjct 3673900 TGGAGGGTGCTCTCCTTCTGAATGTTGTAATCAGAGAGGGTGCGGCCATCCTCGAGCTGC 3673959 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 || || || || ||||| ||||| || || | ||||| ||||||||||| |||||| Sbjct 3673960 TTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGGGGAATTCCCTCCTTGTCCTGAATCTT 3674018 >seq2 Length=6006343 Score = 86.0 bits (94), Expect = 5e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 9094 TGAGCAATCCTGTCCCCCTTATTCACGACAAAGTCTGTGTCGGAATGATTGAACAGCACC 9153 |||||||| | ||| |||| || | ||||||| || |||| || ||||| || | Sbjct 2216325 TGAGCAATACGGTCGCCCTCCTTGATCTCAAAGTCGGTTTCGGCGTGGTTGAAGAGAAGA 2216384 Query 9154 ACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCAGCACCCACGTCGATGAAGTGC 9213 || || | || | ||||||||| || || || || || || ||||||||||||| Sbjct 2216385 ACCTTGACCTCGCCGCGGTAATCCTCGTCAATGACGCCGGCGCCGGTGTCGATGAAGTGC 2216444 Query 9214 TTGACCGCTAGTCCAGAGCGGGGCGCGATTCGACCGT 9250 ||| | || || || |||||||| ||||| || |||| Sbjct 2216445 TTGGCTGCGAGGCCGGAGCGGGGTGCGATGCGGCCGT 2216481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380937479290398