Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Torrubiella_20hemipterigena_20[genbank_20GCA_5F000825705.1_202014-
12-05] 26 sequences; 28,476,206 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq3 89.7 4e-13
seq2 86.0 5e-12
>seq3
Length=4610873
Score = 89.7 bits (98), Expect = 4e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622
||| || |||||||| || ||||| ||||| ||||| ||| | || | || || | |||
Sbjct 3673215 ATGCAGAGTGCTCTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCAAGCTG 3673274
Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682
|||||| ||||| || || || || || || | |||| |||||||| || ||||||
Sbjct 3673275 CTTACCAGCAAAGATAAGACGTTGCTGGTCAGGAGGAATACCCTCCTTATCCTGAATCTT 3673334
Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742
|| || | | | || || | ||| ||||||| || ||||| || || ||
Sbjct 3673335 CGACTTGACGTTGTCGATGGTATCAGAAGACTCAACCTCCAATGTGATCGTCTTGCCGGT 3673394
Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766
| || || || |||||||||||
Sbjct 3673395 GAGGGTCTTGACGAAAATCTGCAT 3673418
Score = 87.8 bits (96), Expect = 1e-12
Identities = 150/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| |||| |||||| || || || ||| || ||||| ||||| || ||| | |||
Sbjct 3673429 AGACGCAGCACCAAGTGCAGAGTAGACTCCTTCTGAATGTTGTAGTCGCTCAGAGTGCGA 3673488
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
|||| || | ||||||||||||||| || || ||||| ||||| | || | ||||||
Sbjct 3673489 CCGTCCTCGAGCTGCTTACCGGCAAAGATAAGACGCTGCTGATCAGGAGGGATACCCTCC 3673548
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
|| || |||||| || ||| | | | || || | ||| || || | |||
Sbjct 3673549 TTATCTTGGATCTTTGACTTGACATTGTCGATTGTGTCCGATGACTCAACTTCTAATGTA 3673608
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || || || || | ||| || ||||| || |||||
Sbjct 3673609 ATAGTCTTGCCAGTAAGAGTCTTGACAAAGATTTGCAT 3673646
Score = 84.2 bits (92), Expect = 2e-11
Identities = 133/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635
|| || || || ||||| || || || | || | || || | |||||| ||||||||
Sbjct 3673684 TCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAA 3673743
Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695
||||| ||||| || || | || | |||||||||||| ||||| || ||
Sbjct 3673744 ATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTG 3673803
Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755
| | || || || | ||| ||||| | ||||| || ||||| |||||||| || ||
Sbjct 3673804 TCAATAGTGTCGGAAGACTCAACCTCGAGGGTAATGGTCTTTCCGGTCAAAGTCTTGACG 3673863
Query 48756 AAAATCTGCAT 48766
|| ||||||||
Sbjct 3673864 AAGATCTGCAT 3673874
Score = 84.2 bits (92), Expect = 2e-11
Identities = 90/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623
|| || |||||||| || ||||| ||||||||||| || | || | || || | ||||
Sbjct 3673900 TGGAGGGTGCTCTCCTTCTGAATGTTGTAATCAGAGAGGGTGCGGCCATCCTCGAGCTGC 3673959
Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682
|| || || || ||||| ||||| || || | ||||| ||||||||||| ||||||
Sbjct 3673960 TTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGGGGAATTCCCTCCTTGTCCTGAATCTT 3674018
>seq2
Length=6006343
Score = 86.0 bits (94), Expect = 5e-12
Identities = 113/157 (72%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 9094 TGAGCAATCCTGTCCCCCTTATTCACGACAAAGTCTGTGTCGGAATGATTGAACAGCACC 9153
|||||||| | ||| |||| || | ||||||| || |||| || ||||| || |
Sbjct 2216325 TGAGCAATACGGTCGCCCTCCTTGATCTCAAAGTCGGTTTCGGCGTGGTTGAAGAGAAGA 2216384
Query 9154 ACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCAGCACCCACGTCGATGAAGTGC 9213
|| || | || | ||||||||| || || || || || || |||||||||||||
Sbjct 2216385 ACCTTGACCTCGCCGCGGTAATCCTCGTCAATGACGCCGGCGCCGGTGTCGATGAAGTGC 2216444
Query 9214 TTGACCGCTAGTCCAGAGCGGGGCGCGATTCGACCGT 9250
||| | || || || |||||||| ||||| || ||||
Sbjct 2216445 TTGGCTGCGAGGCCGGAGCGGGGTGCGATGCGGCCGT 2216481
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380937479290398
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |