Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Torrubiella_20hemipterigena_20[genbank_20GCA_5F000825705.1_202014- 12-05] 26 sequences; 28,476,206 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq3 131 1e-24 >seq3 Length=4610873 Score = 131 bits (144), Expect = 1e-24 Identities = 162/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 || |||||||| || ||||| || || || || || || || || |||| ||||| Sbjct 3673198 CGCAGACGGAGGACGAGATGCAGAGTGCTCTCCTTCTGAATGTTGTAGTCAGAGAGAGTG 3673257 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | | ||||||||| ||||| |||||||| ||||||||||| || ||||||||||| || Sbjct 3673258 CGGCCATCTTCAAGCTGCTTACCAGCAAAGATAAGACGTTGCTGGTCAGGAGGAATACCC 3673317 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAG 480730 ||||| || |||||||| ||||| || || ||||||| | | || | ||| Sbjct 3673318 TCCTTATCCTGAATCTTCGACTTGACGTTGTCGATGGTATCAGAAGACTCAACCTCCAA- 3673376 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || |||||||| ||||| |||||||| || Sbjct 3673377 TGTGATCGTCTTGCCGGTGAGGGTCTTGACGAAAATCTG 3673415 Score = 93.3 bits (102), Expect = 3e-13 Identities = 114/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 || || || ||||| || ||||| |||||||| || ||||||||||| || || ||||| Sbjct 3673492 TCCTCGAGCTGCTTACCGGCAAAGATAAGACGCTGCTGATCAGGAGGGATACCCTCCTTA 3673551 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAAT 480736 ||||| |||||| |||||| || || || || | || | || ||| | ||||| Sbjct 3673552 TCTTGGATCTTTGACTTGACATTGTCGATTGTGTCCGATGACTCAA-CTTCTAATGTAAT 3673610 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || || || |||||||| || || ||||| Sbjct 3673611 AGTCTTGCCAGTAAGAGTCTTGACAAAGATTTG 3673643 Score = 89.7 bits (98), Expect = 3e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 627769 CCATCACGTCCTGCTCTACCTATTTCTTGATAATAACCTTCGATATTTTTAGGTGCGCCA 627828 |||||||| ||||||| ||| | ||||||||||| ||||| | | | || ||| |||| Sbjct 1969198 CCATCACGACCTGCTCGACCAGTCTCTTGATAATAGCCTTCCAAACTCTTGGGTAAGCCA 1969257 Query 627829 TAATGTATTACTGCTCTCACATCTGATTTATTAATACCCATTCCAAATGCAATTGTTGCA 627888 | ||| | || | ||||||| ||||| ||||||||| ||||| || || |||||| Sbjct 1969258 TGATGCACCACAAACCGAACATCTGGTTTATCAATACCCATGCCAAAAGCGATCGTTGCA 1969317 Query 627889 AC 627890 || Sbjct 1969318 AC 1969319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268178084733848