Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Torrubiella_20hemipterigena_20[genbank_20GCA_5F000825705.1_202014- 12-05] 26 sequences; 28,476,206 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1 143 8e-29 seq3 132 1e-25 seq2 116 1e-20 seq6 98.7 3e-15 >seq1 Length=8525130 Score = 143 bits (158), Expect = 8e-29 Identities = 240/342 (70%), Gaps = 4/342 (1%) Strand=Plus/Plus Query 133318 CTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACTCTAAT 133377 ||| || || | ||||| |||||| || ||||| ||| ||||| || || || Sbjct 3939226 CTTCTACGGTTTCCAGATCATGATGGAGAACATCCACTCTGAGACATACTCCCTGCTTAT 3939285 Query 133378 TGATACTTACATCAAAGATACCGTCCAGAAGCACAAAC-TATTCAACGCCATTAGCGA-A 133435 |||||| ||| |||| || | |||| ||||| || | |||||||||||| | || Sbjct 3939286 TGATACCTACGTCAAGGAGCCTACCCAGC-GCACATACCTCTTCAACGCCATT-GAGACC 3939343 Query 133436 TTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCG 133495 |||| ||||| ||||| | |||||||| | || |||||| |||||| | Sbjct 3939344 ATTCCCTGTATCCGCAAGAAGGCCGACTGGGCCCTGAAGTGGATCTCTGACAAGAACTCT 3939403 Query 133496 AGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCG 133555 | |||||| ||||||||||| ||||||| || ||||| || || ||| |||||| Sbjct 3939404 ACCTTTGCTCAGCGTCTCGTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCTCTGGTGCC 3939463 Query 133556 TTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAAC 133615 || ||| || || ||||| || ||||| ||| | | || || ||| || || ||| Sbjct 3939464 TTTGCCTCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTGACCTTCTCCAAC 3939523 Query 133616 GAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657 || || || || | ||||||| ||||||||||| |||||| Sbjct 3939524 GAGCTCATCTCTCGTGACGAGGGTCTTCACACCGACTTTGCC 3939565 >seq3 Length=4610873 Score = 132 bits (146), Expect = 1e-25 Identities = 389/591 (66%), Gaps = 20/591 (3%) Strand=Plus/Plus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 |||||||| || | | || ||||| || ||| |||| || || | ||| | | || Sbjct 1361985 ATAAGACCGCAGATCTCGCAAACATGAACTCTGAAAGCGTCCGAGACTTCAAACAAACGC 1362044 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 |||| |||| | |||||| || | ||||||||||||||| ||||||||||||||| Sbjct 1362045 TCCTTCAAGAAGGCCGCTGCACCATGGGCAATCATACAATCACGTTCCATTTCACCGAAA 1362104 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGA 251586 || ||||||||||| ||||| || || ||| | ||||| || || | | | | ||| Sbjct 1362105 CGTAGACCACCATCACGAGCTCTGCCTTCGACGGGCTGTCGTGTCATAATCTGGAGGGGA 1362164 Query 251587 CCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCG 251646 ||| | || ||| ||| |||| ||||||||| || ||||||||| ||| Sbjct 1362165 CCGCGAGCACGAGCATGGATCTTGTCATCTACCATATGGCGAAGGCGCTGGTAGTATGTT 1362224 Query 251647 GGACCGATGAAGA----TGCTCGAAGGCATTTGCTCTCCAGTTAGAGCGTTATACATAAC 251702 || || | ||||| |||||| || || | || || || |||| ||||| || Sbjct 1362225 GGGCCAAAGAAGACCTGTGCTCGCAG---CTTAC-GGCCTGTGTGACCGTTGTACATCAC 1362280 Query 251703 TTCGTTTCCATTAGATTCATAACCAAGTTTCTGTAGC---TCTGAAGCAATATCACCAAT 251759 ||| ||| ||| | || ||| | ||| | ||| || ||| | | ||| Sbjct 1362281 CTCGAAGCCACGAGACTGGTACCCATGCTTCCGAAGCAATTCGGAAACCGAGT---CAAC 1362337 Query 251760 CTTGAATTTGCTAAAACTGGTGCCGTCTCCGTAAAGACCCATTTGAA--TCAACACTTTG 251817 ||| | | || || |||| || | | || || || | | |||||| Sbjct 1362338 GGTGACGTCTGTGAAGGGAGTTGCGTCACCCTCCATGCC--TTCCAAAGTGGAAACTTTG 1362395 Query 251818 CCTAAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTG 251877 | | || ||| ||| || || || ||||||||| ||||| || || || ||| Sbjct 1362396 CTCAGCAGACACTCAATCAAATGAGCAATTGTCATACGAGACGGAATGGCGTGAGGGTTG 1362455 Query 251878 ATGATGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATA-AT 251936 ||||| ||||| || | | || ||| ||||| ||||| | ||| | || || | Sbjct 1362456 ATGATAATGTCAGGAGTAACACCTTCACGGGTGAATGGCATGT-CTTCTTGTCGGTAGGT 1362514 Query 251937 GTTTCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 | |||||||| || || || |||||||||||| ||||| |||||||| Sbjct 1362515 GACACCAATAGTACCTTTCTGACCGTGACGAGAAGCAAACTTGTCACCAAT 1362565 >seq2 Length=6006343 Score = 116 bits (128), Expect = 1e-20 Identities = 110/140 (79%), Gaps = 3/140 (2%) Strand=Plus/Plus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||| | || |||||||||||| |||| ||||| |||||||| ||||||||| Sbjct 4336822 AGAATTTCCTTAAGACGGGGAACACCGAGGGTAACGTT---CTTGGACGACACACCAGCA 4336878 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 || |||||||| ||||| || | ||||||| |||||||||||| || || || | Sbjct 4336879 AAATGGAAAGTGTTCAGTGTCATCTGAGTAGCGGGCTCACCAATAGACTGGGCAGCCAAG 4336938 Query 301933 ATACCAACCATTTCTCCTGG 301952 | |||||||||||| || || Sbjct 4336939 ACACCAACCATTTCACCAGG 4336958 Score = 105 bits (116), Expect = 2e-17 Identities = 187/273 (68%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 302571 GTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGC 302630 |||||||| | ||| | | |||||||| || ||||||||| | ||||| || || Sbjct 4337598 GTCTTCCAGAGCCTTCACCAGTCGACGCTGGATGTAACCAGTTTCTGCAGTTTTAACTGC 4337657 Query 302631 TGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAG 302690 |||||||| ||||| | | ||| |||| || |||||||| | ||| || || Sbjct 4337658 AGTATCAATGAGACCTTCTCTACCGGCCATGGCGTGGAAGAAGAACTCGGATGGAGTGAG 4337717 Query 302691 CCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGT 302750 || | | | ||| |||||||||||||||| || ||||| || | || ||| || Sbjct 4337718 ACCACGGAGGTACGAGTTCTCAACGAAACCACGAGCTTCGGGAGAGTAATCATCCTTTGT 4337777 Query 302751 AAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTG 302810 || || || || || |||| || | || | || ||||||||||| || || | || Sbjct 4337778 GAAATGGGGAAGAGTTCTGTACTTGAAACCAAAGGGAATACGCTTTCCTTCGACAATTTG 4337837 Query 302811 CTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 ||| || | | | | ||||||| ||||| || Sbjct 4337838 CTGACCGACGAGAGCACTCATCTGTGAAATGTT 4337870 Score = 84.2 bits (92), Expect = 6e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 354015 GGCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTCAAGGATAAGAAC 354074 ||| ||| |||| || |||||||| || | ||| ||||||||||||||||| | ||| | Sbjct 2282508 GGCAAGACCACCGAGAGAGTCACGATCCAAGAAGTTAGTAGGTTCGTCAAGAACAAGCAA 2282449 Query 354075 GTGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTGTCCGCCTGATAG 354134 ||| || | ||||||| || |||| | || ||||| ||||| || || || || || Sbjct 2282448 GTGAGGGTTGTTCCACATGGCACCAGCAATGACGACCTTGACCTTTTGGCCTCCGGAAAG 2282389 Query 354135 TGCGTGAATCT 354145 | | ||||| Sbjct 2282388 CGAGCCAATCT 2282378 >seq6 Length=1657838 Score = 98.7 bits (108), Expect = 3e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 251480 GAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCAT 251539 |||| ||||| | | |||| ||||||||| ||||||||||| | ||| |||||||| | Sbjct 1052050 GAGAAGCACCATACGCGATCAAACAATCACGTTCCATTTCACCCAGACGCAGACCACCGT 1052109 Query 251540 CGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGC 251599 | || | | ||| || | ||||||||||| || | | ||||||| ||| | Sbjct 1052110 CTCGCGAACGACCTTCTGTCGGCTGACGAGTCAGGATGGCGCGAGGACCGCGGGATCTAG 1052169 Query 251600 TATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGA 251659 ||| |||||| | ||||| ||||| || ||||||||| | ||| ||| |||||| Sbjct 1052170 AATGCATCTTATCTTGCACCATGTGCTTCAGGCGCTGGTAGTAGATGGGGCCGTTGAAGA 1052229 Query 251660 TG 251661 || Sbjct 1052230 TG 1052231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817109700762