Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Torrubiella_20hemipterigena_20[genbank_20GCA_5F000825705.1_202014-
12-05] 26 sequences; 28,476,206 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq1 143 8e-29
seq3 132 1e-25
seq2 116 1e-20
seq6 98.7 3e-15
>seq1
Length=8525130
Score = 143 bits (158), Expect = 8e-29
Identities = 240/342 (70%), Gaps = 4/342 (1%)
Strand=Plus/Plus
Query 133318 CTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACTCTAAT 133377
||| || || | ||||| |||||| || ||||| ||| ||||| || || ||
Sbjct 3939226 CTTCTACGGTTTCCAGATCATGATGGAGAACATCCACTCTGAGACATACTCCCTGCTTAT 3939285
Query 133378 TGATACTTACATCAAAGATACCGTCCAGAAGCACAAAC-TATTCAACGCCATTAGCGA-A 133435
|||||| ||| |||| || | |||| ||||| || | |||||||||||| | ||
Sbjct 3939286 TGATACCTACGTCAAGGAGCCTACCCAGC-GCACATACCTCTTCAACGCCATT-GAGACC 3939343
Query 133436 TTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCG 133495
|||| ||||| ||||| | |||||||| | || |||||| |||||| |
Sbjct 3939344 ATTCCCTGTATCCGCAAGAAGGCCGACTGGGCCCTGAAGTGGATCTCTGACAAGAACTCT 3939403
Query 133496 AGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCG 133555
| |||||| ||||||||||| ||||||| || ||||| || || ||| ||||||
Sbjct 3939404 ACCTTTGCTCAGCGTCTCGTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCTCTGGTGCC 3939463
Query 133556 TTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAAC 133615
|| ||| || || ||||| || ||||| ||| | | || || ||| || || |||
Sbjct 3939464 TTTGCCTCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTGACCTTCTCCAAC 3939523
Query 133616 GAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657
|| || || || | ||||||| ||||||||||| ||||||
Sbjct 3939524 GAGCTCATCTCTCGTGACGAGGGTCTTCACACCGACTTTGCC 3939565
>seq3
Length=4610873
Score = 132 bits (146), Expect = 1e-25
Identities = 389/591 (66%), Gaps = 20/591 (3%)
Strand=Plus/Plus
Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466
|||||||| || | | || ||||| || ||| |||| || || | ||| | | ||
Sbjct 1361985 ATAAGACCGCAGATCTCGCAAACATGAACTCTGAAAGCGTCCGAGACTTCAAACAAACGC 1362044
Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526
|||| |||| | |||||| || | ||||||||||||||| |||||||||||||||
Sbjct 1362045 TCCTTCAAGAAGGCCGCTGCACCATGGGCAATCATACAATCACGTTCCATTTCACCGAAA 1362104
Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGA 251586
|| ||||||||||| ||||| || || ||| | ||||| || || | | | | |||
Sbjct 1362105 CGTAGACCACCATCACGAGCTCTGCCTTCGACGGGCTGTCGTGTCATAATCTGGAGGGGA 1362164
Query 251587 CCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCG 251646
||| | || ||| ||| |||| ||||||||| || ||||||||| |||
Sbjct 1362165 CCGCGAGCACGAGCATGGATCTTGTCATCTACCATATGGCGAAGGCGCTGGTAGTATGTT 1362224
Query 251647 GGACCGATGAAGA----TGCTCGAAGGCATTTGCTCTCCAGTTAGAGCGTTATACATAAC 251702
|| || | ||||| |||||| || || | || || || |||| ||||| ||
Sbjct 1362225 GGGCCAAAGAAGACCTGTGCTCGCAG---CTTAC-GGCCTGTGTGACCGTTGTACATCAC 1362280
Query 251703 TTCGTTTCCATTAGATTCATAACCAAGTTTCTGTAGC---TCTGAAGCAATATCACCAAT 251759
||| ||| ||| | || ||| | ||| | ||| || ||| | | |||
Sbjct 1362281 CTCGAAGCCACGAGACTGGTACCCATGCTTCCGAAGCAATTCGGAAACCGAGT---CAAC 1362337
Query 251760 CTTGAATTTGCTAAAACTGGTGCCGTCTCCGTAAAGACCCATTTGAA--TCAACACTTTG 251817
||| | | || || |||| || | | || || || | | ||||||
Sbjct 1362338 GGTGACGTCTGTGAAGGGAGTTGCGTCACCCTCCATGCC--TTCCAAAGTGGAAACTTTG 1362395
Query 251818 CCTAAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTG 251877
| | || ||| ||| || || || ||||||||| ||||| || || || |||
Sbjct 1362396 CTCAGCAGACACTCAATCAAATGAGCAATTGTCATACGAGACGGAATGGCGTGAGGGTTG 1362455
Query 251878 ATGATGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATA-AT 251936
||||| ||||| || | | || ||| ||||| ||||| | ||| | || || |
Sbjct 1362456 ATGATAATGTCAGGAGTAACACCTTCACGGGTGAATGGCATGT-CTTCTTGTCGGTAGGT 1362514
Query 251937 GTTTCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987
| |||||||| || || || |||||||||||| ||||| ||||||||
Sbjct 1362515 GACACCAATAGTACCTTTCTGACCGTGACGAGAAGCAAACTTGTCACCAAT 1362565
>seq2
Length=6006343
Score = 116 bits (128), Expect = 1e-20
Identities = 110/140 (79%), Gaps = 3/140 (2%)
Strand=Plus/Plus
Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872
|||||||| | || |||||||||||| |||| ||||| |||||||| |||||||||
Sbjct 4336822 AGAATTTCCTTAAGACGGGGAACACCGAGGGTAACGTT---CTTGGACGACACACCAGCA 4336878
Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932
|| |||||||| ||||| || | ||||||| |||||||||||| || || || |
Sbjct 4336879 AAATGGAAAGTGTTCAGTGTCATCTGAGTAGCGGGCTCACCAATAGACTGGGCAGCCAAG 4336938
Query 301933 ATACCAACCATTTCTCCTGG 301952
| |||||||||||| || ||
Sbjct 4336939 ACACCAACCATTTCACCAGG 4336958
Score = 105 bits (116), Expect = 2e-17
Identities = 187/273 (68%), Gaps = 0/273 (0%)
Strand=Plus/Plus
Query 302571 GTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGC 302630
|||||||| | ||| | | |||||||| || ||||||||| | ||||| || ||
Sbjct 4337598 GTCTTCCAGAGCCTTCACCAGTCGACGCTGGATGTAACCAGTTTCTGCAGTTTTAACTGC 4337657
Query 302631 TGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAG 302690
|||||||| ||||| | | ||| |||| || |||||||| | ||| || ||
Sbjct 4337658 AGTATCAATGAGACCTTCTCTACCGGCCATGGCGTGGAAGAAGAACTCGGATGGAGTGAG 4337717
Query 302691 CCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGT 302750
|| | | | ||| |||||||||||||||| || ||||| || | || ||| ||
Sbjct 4337718 ACCACGGAGGTACGAGTTCTCAACGAAACCACGAGCTTCGGGAGAGTAATCATCCTTTGT 4337777
Query 302751 AAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTG 302810
|| || || || || |||| || | || | || ||||||||||| || || | ||
Sbjct 4337778 GAAATGGGGAAGAGTTCTGTACTTGAAACCAAAGGGAATACGCTTTCCTTCGACAATTTG 4337837
Query 302811 CTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843
||| || | | | | ||||||| ||||| ||
Sbjct 4337838 CTGACCGACGAGAGCACTCATCTGTGAAATGTT 4337870
Score = 84.2 bits (92), Expect = 6e-11
Identities = 97/131 (74%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 354015 GGCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTCAAGGATAAGAAC 354074
||| ||| |||| || |||||||| || | ||| ||||||||||||||||| | ||| |
Sbjct 2282508 GGCAAGACCACCGAGAGAGTCACGATCCAAGAAGTTAGTAGGTTCGTCAAGAACAAGCAA 2282449
Query 354075 GTGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTGTCCGCCTGATAG 354134
||| || | ||||||| || |||| | || ||||| ||||| || || || || ||
Sbjct 2282448 GTGAGGGTTGTTCCACATGGCACCAGCAATGACGACCTTGACCTTTTGGCCTCCGGAAAG 2282389
Query 354135 TGCGTGAATCT 354145
| | |||||
Sbjct 2282388 CGAGCCAATCT 2282378
>seq6
Length=1657838
Score = 98.7 bits (108), Expect = 3e-15
Identities = 131/182 (72%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 251480 GAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCAT 251539
|||| ||||| | | |||| ||||||||| ||||||||||| | ||| |||||||| |
Sbjct 1052050 GAGAAGCACCATACGCGATCAAACAATCACGTTCCATTTCACCCAGACGCAGACCACCGT 1052109
Query 251540 CGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGC 251599
| || | | ||| || | ||||||||||| || | | ||||||| ||| |
Sbjct 1052110 CTCGCGAACGACCTTCTGTCGGCTGACGAGTCAGGATGGCGCGAGGACCGCGGGATCTAG 1052169
Query 251600 TATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGA 251659
||| |||||| | ||||| ||||| || ||||||||| | ||| ||| ||||||
Sbjct 1052170 AATGCATCTTATCTTGCACCATGTGCTTCAGGCGCTGGTAGTAGATGGGGCCGTTGAAGA 1052229
Query 251660 TG 251661
||
Sbjct 1052230 TG 1052231
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471817109700762
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |