Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Torrubiella_20hemipterigena_20[genbank_20GCA_5F000825705.1_202014- 12-05] 26 sequences; 28,476,206 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1 159 4e-33 seq2 141 1e-27 seq3 105 8e-17 >seq1 Length=8525130 Score = 159 bits (176), Expect = 4e-33 Identities = 241/338 (71%), Gaps = 6/338 (2%) Strand=Plus/Plus Query 1573968 GAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACGTCGTGCGCAAGATC 1574027 |||||||| ||||| |||||||| ||||||||||| |||||||||||||||| Sbjct 3019270 GAGGCCGTTCTCGAGCTCAACGCCAGTGACGAGCGCGGTATCGACGTCGTGCGCAACCGA 3019329 Query 1574028 ATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCGGACGCCACAAGGTGATCATC 1574087 |||||| | ||| |||| || || || | || ||||||||| | |||| Sbjct 3019330 ATCAAGGGCTTTGCCCAGAAGAAAGTCACACTCCCTGCTGGCCGCCACAAGCTCGTCATT 3019389 Query 1574088 CTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGCCCTGCGGTCCACCATGGAA 1574147 |||||||| |||||| || | || |||| || ||||||||||| || ||||||||| Sbjct 3019390 CTCGACGAAGCCGACAGCATGACCTCGGGCGCGCAGCAGGCCCTCCGCCGTACCATGGAA 3019449 Query 1574148 AAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACACGTCGTCGATGGTCATCGAG 1574207 | || |||||||||| ||||| ||| | || |||||| ||| | | |||||||| Sbjct 3019450 ATCTACTCCAACACGACCCGCTTCGCCTTTGCCTGCAACCAGTCCAACAAGATCATCGAG 3019509 Query 1574208 GCCCTCCAAAGTC--GCTGCGCCATTCTGCGCTTTGTGCGCCTGGGTGACGCCCAGATAC 1574265 | || | |||| | |||||||| ||||||| | ||| ||||| ||| | Sbjct 3019510 CCGCTGC--AGTCGAGATGCGCCATCCTGCGCTACGCCAAACTGACCGACGCGCAGGTCG 3019567 Query 1574266 GCGCGCGCCT-ATGCGATATTGTCGCCGCCGAAAAGGT 1574302 | |||||| |||| | ||| ||| ||||||||||| Sbjct 3019568 TCAAGCGCCTGATGC-AGATTATCGAGGCCGAAAAGGT 3019604 Score = 143 bits (158), Expect = 3e-28 Identities = 208/289 (72%), Gaps = 11/289 (4%) Strand=Plus/Minus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| ||||| ||| ||| | |||||| |||| || ||||||||||| |||||||| Sbjct 3939547 ACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCGCGCTT 3939488 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||||||||| ||||||| | || || ||||| ||||| ||||||||||| ||||| Sbjct 3939487 CTTGAGCCAGAAGATGGAGGCAAAGGCACCAGAGAAGAAGATACCCTCGACGGCAGCAAA 3939428 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGT---TGATCCACTTCATCGC 869355 | | | ||| |||| |||||| || ||| | ||||| ||||||||||| || Sbjct 3939427 GGCAACGAGACGCTGAGCAAAG--GTAGAG----TTCTTGTCAGAGATCCACTTCAGGGC 3939374 Query 869356 CCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCT 869414 |||||||||||| || | | | || | || || |||||| ||||||| || | Sbjct 3939373 CCAGTCGGCCTTCTTGCGGATACAGGGAATGGTCTCAATGGCGTTGAAGAGGTATGTGC- 3939315 Query 869415 TTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 | || || |||||||| ||||| || || || || || || ||||| Sbjct 3939314 GCTGGGTAGGCTCCTTGACGTAGGTATCAATAAGCAGGGAGTATGTCTC 3939266 Score = 136 bits (150), Expect = 5e-26 Identities = 300/447 (67%), Gaps = 17/447 (4%) Strand=Plus/Plus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 |||||||||||||| || |||| ||| ||||| || | |||||| | || |||||||| Sbjct 557109 TGGTCGACGTAGCGGGCGGTGTTGTTGAAGACACGCAACATGGGGATGACACCGTTGGAG 557168 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 |||||||| || || | ||| | ||| | ||| || | ||| ||| | || Sbjct 557169 GTACCGTTGGTACCAGCGATGTAAGAGCCTGTGGCACGGATGCGGTGGGCGTTGAGACCA 557228 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 ||||| || ||| ||||||||| | || || ||||| || ||||| || ||||| Sbjct 557229 ATGCCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGGGTATCGTAAATACCCTCA 557288 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 || || |||||||||| || | ||||| || || || || | || ||| Sbjct 557289 ATGCTATCCTCCTTCATGTCAACCAAGAAGCAGGAAGAAAGCTGGCACTGGGGTGTACCG 557348 Query 1630306 GCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGTG 1630365 ||||||||||| || || | || |||||| |||| |||||| || |||||| Sbjct 557349 GCGTTGAAGAGGGTAGGGGAGGCATGGGTGAAGAACTTGTTAGACATGAGGTTGTAGGTC 557408 Query 1630366 GCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGACG 1630425 |||| || ||| || | || | | | |||| | |||| ||||| Sbjct 557409 TCGAGAACACGC------------TCGATGTTGTC-ACCCCAAA--TACCGACAGCGACT 557453 Query 1630426 CGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGAC 1630485 | ||||| ||||| |||||| |||||||||| |||| | |||| |||||| || Sbjct 557454 CTCATGATCATGTGCTGGGGACGCTCGACGATCTTGCCGTCAATCTTGAGCAGGTATGAG 557513 Query 1630486 CGGCGCATG-GTCATGAGGCCAAAGTA 1630511 | || || | ||| ||| ||| ||||| Sbjct 557514 C-GCTCAAGAGTCTTGAAGCCGAAGTA 557539 Score = 118 bits (130), Expect = 1e-20 Identities = 176/246 (72%), Gaps = 8/246 (3%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||||||||| || ||| |||||| |||||||||||||| | || ||||| Sbjct 3939861 GCCTTCTGGTACTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATG 3939802 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCC--GAGCGACG 868808 |||||| | ||| ||||||| | |||||| ||| ||| || |||||||| Sbjct 3939801 TTCTCCATGAAGTCGAAGGGGTTGGTGGACTTGTAAATCTTCTCGTTGCCAAGAGCGACG 3939742 Query 868809 CGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA 868868 || || || || ||||| ||||| |||||||| ||||||| |||||||||||||| Sbjct 3939741 --AGGAGACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTTGGCGTTCATGCCGA 3939684 Query 868869 --TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGAC 868926 |||||| | || || | |||| | | ||||| | ||| || ||| || || Sbjct 3939683 GCAGAGCGCAA--GGAAGAGCCTCGGTAAGGAACTCCTGCTCAATGGTGACAGCGTCAGT 3939626 Query 868927 GATGAT 868932 |||||| Sbjct 3939625 GATGAT 3939620 Score = 109 bits (120), Expect = 7e-18 Identities = 205/299 (69%), Gaps = 3/299 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||||||||| || ||||||||| ||||| ||| | |||| | | ||| Sbjct 3939264 GAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAGCGACCCTCGGGAATCTGG 3939205 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||| || ||| || || ||||||||| || || ||||| |||||| || Sbjct 3939204 ACCTCGTTGGAGAAGCGCTCGAGAAGGTTCTCGTTAACAATACCGTCAGAGGCGGCAAAG 3939145 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAG-CGACAC--CCAGTGG 869809 || || || | ||| ||| |||| |||||| ||| |||| || ||| | | Sbjct 3939144 AAGGCAAGAATGTGGGAGATGAAGTATTTCTCGTCATCGTTGAGACGGTTGTTCCAATCG 3939085 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 || | || || | || ||||| ||||||| |||||||||||||| ||| Sbjct 3939084 TGCAGATCCTTGGAAAGATCGATTTCTTCGGCTGTCCAGAATGAGGCCTCGGCCTTCTTG 3939025 Query 869870 TACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTC 869928 ||||||| ||| | | ||||| ||| |||||||| || |||||||||||||| || Sbjct 3939024 TACATCTGCCAGATCTCGTGGTACTTGATGGGGAAGAGAACGAAGCGGTTGGGGTTCTC 3938966 >seq2 Length=6006343 Score = 141 bits (156), Expect = 1e-27 Identities = 93/103 (90%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 1592192 AACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGATC 1592251 ||||||||||| ||||||||||| |||||| |||| |||||| | || |||||||||||| Sbjct 4970141 AACTACCTCGATATCAAGCCTCTCCTCGATGTTGGTTGCAAGACCGTCGCCAACATGATC 4970082 Query 1592252 AAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 |||||||||||||| |||||||||||||| ||||| ||||||| Sbjct 4970081 AAGGGCAAGTCGCCTGAGGAGATCCGCAAAACCTTCAACATCA 4970039 >seq3 Length=4610873 Score = 105 bits (116), Expect = 8e-17 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 18358 CCGCGGCCCTCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCG 18417 ||||| ||||| |||||||||| |||||| | | ||||||||||||||||| || || Sbjct 3369741 CCGCGCCCCTCCCACGCCGACTGGACCTACCTCGAAAAGTACGGCATCAAGGCCTCCTCC 3369800 Query 18418 GGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCC 18477 || || ||||| ||||||||||||| | || ||||||||||| || || ||| Sbjct 3369801 GGTGGTGGCCGCAGCAGTGCCCGCGAGACCATTGCTCGTGTCGCCGCCGGTGCCGTTGCC 3369860 Query 18478 GAGAAATGGCT 18488 ||||| ||||| Sbjct 3369861 GAGAAGTGGCT 3369871 Score = 98.7 bits (108), Expect = 1e-14 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 19053 ATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCCGTGC 19112 ||||||||||| || || ||| | ||| | ||| | ||||| |||||||| | Sbjct 3370098 ATCGGCGGCACCGTCACCTGCATTATCCGCGGCTGCCCGTCTGGCCTTGGCGAGCCCGCC 3370157 Query 19113 TTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGGA 19172 ||||||||| ||||||| ||||| ||||||||| ||||||| || || |||||||| Sbjct 3370158 TTTGACAAGCTCGAGGCTCTCCTCGCACACGCCATGATGTCGATTCCTGCGACCAAGGGC 3370217 Query 19173 TTCGAGATTGGC 19184 || ||||||||| Sbjct 3370218 TTTGAGATTGGC 3370229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107137066318242