Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Torrubiella_20hemipterigena_20[genbank_20GCA_5F000825705.1_202014-
12-05] 26 sequences; 28,476,206 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq1 176 7e-38
seq2 132 8e-25
seq5 114 2e-19
>seq1
Length=8525130
Score = 176 bits (194), Expect = 7e-38
Identities = 301/437 (69%), Gaps = 0/437 (0%)
Strand=Plus/Plus
Query 2019003 GACGGCAACATGCCCAACCTCTTGCTGGCGGGCCCGCCCGGCACGGGCAAGACCACGAGC 2019062
|| || |||||||| || || | | | ||| ||| || | || ||||||| ||
Sbjct 3019168 GAAGGGAACATGCCGCACGTCATCATCTCCGGCATGCCTGGTATCGGAAAGACCAGCAGT 3019227
Query 2019063 ATCGCGTGCCTGGCGCGCGTGCTCTTGGGCGCGGCCGCCGACGAGGCCGTGCTCGAACTC 2019122
|| |||||||| |||| || | |||| | | | |||||||| ||||| |||
Sbjct 3019228 GTCCTCTGCCTGGCCCGCGAACTGCTCGGCGACACGTACAAGGAGGCCGTTCTCGAGCTC 3019287
Query 2019123 AATGCGTCAGACGAGCGCGGCGTGGACGTCGTGCGTAGAATCATCAAGCATCACGCTTCG 2019182
|| || ||||||||||| | ||||||||||| | |||||| || |
Sbjct 3019288 AACGCCAGTGACGAGCGCGGTATCGACGTCGTGCGCAACCGAATCAAGGGCTTTGCCCAG 3019347
Query 2019183 AAAAGAATCGACCTGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGC 2019242
|| | | || || || | |||||||||||| | |||| ||||| || |||||| ||
Sbjct 3019348 AAGAAAGTCACACTCCCTGCTGGCCGCCACAAGCTCGTCATTCTCGACGAAGCCGACAGC 3019407
Query 2019243 CTTACGTCGGCGGCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACG 2019302
| || |||| || |||||||||||||| |||||||||| ||| ||||||||||
Sbjct 3019408 ATGACCTCGGGCGCGCAGCAGGCCCTCCGCCGTACCATGGAAATCTACTCCAACACGACC 3019467
Query 2019303 CGGTTTGCGCTGGCCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGC 2019362
|| || || | ||||||||| ||| | | ||||||| | || ||| | |||
Sbjct 3019468 CGCTTCGCCTTTGCCTGCAACCAGTCCAACAAGATCATCGAGCCGCTGCAGTCGAGATGC 3019527
Query 2019363 GCCATCTTGCGCTTTGCGCGCCTCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATT 2019422
|||||| |||||| || || |||||||| ||| ||| | ||| ||| |||||
Sbjct 3019528 GCCATCCTGCGCTACGCCAAACTGACCGACGCGCAGGTCGTCAAGCGCCTGATGCAGATT 3019587
Query 2019423 ATCGACGCCGAAAAGGT 2019439
||||| |||||||||||
Sbjct 3019588 ATCGAGGCCGAAAAGGT 3019604
Score = 172 bits (190), Expect = 9e-37
Identities = 241/332 (73%), Gaps = 11/332 (3%)
Strand=Plus/Minus
Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399
||| ||||| ||| ||| | |||||| ||| || ||||||||||| ||||||||
Sbjct 3939547 ACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCGCGCTT 3939488
Query 794400 CTTGAGCCAAAAGATGG---CACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC 794456
||||||||| ||||||| || || || | ||||| ||||| ||||||||||| ||
Sbjct 3939487 CTTGAGCCAGAAGATGGAGGCAAAGGCAC---CAGAGAAGAAGATACCCTCGACGGCAGC 3939431
Query 794457 AAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGC 794516
|||| | ||||| |||| ||||| || || | | | | ||||||||||| ||
Sbjct 3939430 AAAGGCAACGAGACGCTGAGCAAAGGTAG--AGTTCTTGTCAGA-GATCCACTTCAGGGC 3939374
Query 794517 CCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTG-GTCCT 794575
||| || ||||| || | | |||| | || || |||||| ||||||| || |
Sbjct 3939373 CCAGTCGGCCTTCTTGCGGATACAGGGAATGGTCTCAATGGCGTTGAAGAGGTATGTGCG 3939314
Query 794576 TCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGT 794635
|| | || |||||||||||||| || || || || ||||| ||||| ||||||||||
Sbjct 3939313 -CTGGGTAGGCTCCTTGACGTAGGTATCAATAAGCAGGGAGTATGTCTCAGAGTGGATGT 3939255
Query 794636 TTTCGATGGCGATCTGGAAGCCATAAAAGCAG 794667
| || || ||||||||| || || ||||||
Sbjct 3939254 TCTCCATCATGATCTGGAAACCGTAGAAGCAG 3939223
Score = 123 bits (136), Expect = 4e-22
Identities = 182/254 (72%), Gaps = 8/254 (3%)
Strand=Plus/Minus
Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950
|||| || ||||| |||||||| || ||| |||||| |||||||||||||| | |
Sbjct 3939869 TGACACCGGCCTTCTGGTACTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAA 3939810
Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCC-- 794008
| ||||| |||||| | ||| ||||||| | | ||| ||||||| ||
Sbjct 3939809 GGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGACTTGTAAATCTTCTCGTTGCCAA 3939750
Query 794009 GAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTT 794068
|||||||| || || || || |||||||| ||||||||||| ||||||| ||||||
Sbjct 3939749 GAGCGACG--AGGAGACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTTGGCGTT 3939692
Query 794069 CATGCCGA--TGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACG 794126
|||||||| |||||| | || || | |||| | | ||||| | ||| || |||
Sbjct 3939691 CATGCCGAGCAGAGCGCAA--GGAAGAGCCTCGGTAAGGAACTCCTGCTCAATGGTGACA 3939634
Query 794127 GCCTCGATGATGAT 794140
|| || |||||||
Sbjct 3939633 GCGTCAGTGATGAT 3939620
Score = 118 bits (130), Expect = 2e-20
Identities = 189/269 (70%), Gaps = 3/269 (1%)
Strand=Plus/Minus
Query 796151 CCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCGT 796210
||||||| | |||||||| || |||||| || |||||||| || || ||||
Sbjct 3939218 CCTCGGGAATCTGGACCTCGTTGGAGAAGCGCTCGAGAAGGTTCTCGTTAACAATACCGT 3939159
Query 796211 CGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG-C 796269
| |||||| || ||||| || | ||| ||| |||| |||||| ||| |||| |
Sbjct 3939158 CAGAGGCGGCAAAGAAGGCAAGAATGTGGGAGATGAAGTATTTCTCGTCATCGTTGAGAC 3939099
Query 796270 GA--GACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGG 796327
| | ||| | | | || | || |||| || ||||| ||||| || ||||
Sbjct 3939098 GGTTGTTCCAATCGTGCAGATCCTTGGAAAGATCGATTTCTTCGGCTGTCCAGAATGAGG 3939039
Query 796328 CCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGC 796387
|||||||||| |||||||||| ||| ||| ||||| ||||||||| ||||| ||||
Sbjct 3939038 CCTCGGCCTTCTTGTACATCTGCCAGATCTCGTGGTACTTGATGGGGAAGAGAACGAAGC 3938979
Query 796388 GATTGGGGTTCTCGCGTAGCAGCGGCTCG 796416
| ||||||||||| | || | ||||||
Sbjct 3938978 GGTTGGGGTTCTCCTGGAGGATGGGCTCG 3938950
>seq2
Length=6006343
Score = 132 bits (146), Expect = 8e-25
Identities = 91/103 (88%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 2035653 AACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTATC 2035712
||||||||||| |||||||| ||||||||| | || ||||||||||| |||||| | |||
Sbjct 4970141 AACTACCTCGATATCAAGCCTCTCCTCGATGTTGGTTGCAAGACCGTCGCCAACATGATC 4970082
Query 2035713 AAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755
|||||||||||||| ||||| |||||||| ||||| |||||||
Sbjct 4970081 AAGGGCAAGTCGCCTGAGGAGATCCGCAAAACCTTCAACATCA 4970039
>seq5
Length=2539488
Score = 114 bits (126), Expect = 2e-19
Identities = 128/170 (75%), Gaps = 6/170 (4%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|||||||||||||||||||||| ||||| |||||||||||| |||| ||||| ||| | |
Sbjct 1996343 TGTACTTGGTGACGGCCTTGGTGCCCTCAGAGACGGCGTGCTTGGCAAGTTCACCGGGGA 1996402
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTG---TTGCGCTTGTTAG 1485586
||||||||| || || || ||||| ||||||| ||| ||| ||| | |||| ||
Sbjct 1996403 GGATCAGGCGAACAGCCGTTTGGATTTCGCGGGAAGAGATGGTGGACTTGTGGTTGTAAG 1996462
Query 1485587 TGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTG 1485636
| ||||| | ||| || ||| | | ||| |||| ||||| |||
Sbjct 1996463 AG---GCCAGCTTGGAGGCATCTGTGGCAACGCGCTCGAAGATGTCTTTG 1996509
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916243634261414
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |