Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Torrubiella_20hemipterigena_20[genbank_20GCA_5F000825705.1_202014- 12-05] 26 sequences; 28,476,206 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1 248 1e-59 >seq1 Length=8525130 Score = 248 bits (274), Expect = 1e-59 Identities = 433/616 (70%), Gaps = 18/616 (3%) Strand=Plus/Plus Query 1455715 CGAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCG 1455774 |||||| | || | || ||||| |||||||| || || ||||||||| ||||| Sbjct 3938950 CGAGCCCATCCTCCAGGAGAACCCCAACCGCTTCGTTCTCTTCCCCATCAAGTACCACGA 3939009 Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || |||||||||||||| || ||||| ||||| || |||| | Sbjct 3939010 GATCTGGCAGATGTAC-AAGAAGGCCGAGGCCTCATTCTGGACAGCCGAAGAAATCGATC 3939068 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGT--CG-CTGAGCGACGACGAGCGCCATTTCATCA 1455891 | | || | | | ||| || || | ||| |||||| | |||||| Sbjct 3939069 TTTCCAAGGATCTGCACGATTGGAACAACCGTCTCAACGATGACGAGAAATACTTCATCT 3939128 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 ||| | || ||||| ||| |||||| || || || || ||||||||| || Sbjct 3939129 CCCACATTCTTGCCTTCTTT-GCCGCCTCTGACGGTATTGTTAACGAGAACCTTCTCGAG 3939187 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||| || |||||||| | || |||| || | || ||||| ||||||||| Sbjct 3939188 CGCTTCTCCAACGAGGTCCAGATTCCCGAGGGTCGCTGCTTCTACGGTTTCCAGATCATG 3939247 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 || || |||||||||||||| || ||||| || || || || |||||||||||||| || Sbjct 3939248 ATGGAGAACATCCACTCTGAGACATACTCCCTGCTTATTGATACCTACGTCAAGGAGCCT 3939307 Query 1456072 GTCGAGAAGGAC-CACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGC 1456130 | || | || ||||||| |||||| || || | || | | | || ||||| Sbjct 3939308 ACCCAG-CGCACATACCTCTTCAACGCCATTGAGACCATTCCCTGTATCCGCAAGAAGGC 3939366 Query 1456131 CGACTGGGCGATGAAGTGGATC---AACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTC 1456187 ||||||||| ||||||||||| ||||| | ||| || |||||| |||| ||| Sbjct 3939367 CGACTGGGCCCTGAAGTGGATCTCTGACAAGAA----CTCTAC-CTTTGCTCAGCGTCTC 3939421 Query 1456188 GTCGGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGG 1456246 || | |||||| | ||||||||| ||||| ||||| || || | ||||||| ||| Sbjct 3939422 GTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCTCTGGTGCCTTTGCCTCCATCTTCTGG 3939481 Query 1456247 CTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGA 1456306 |||||||||||||| ||||||||||||| | ||| |||||| | ||| ||| || Sbjct 3939482 CTCAAGAAGCGCGGTCTCATGCCCGGTC-TGACCTTCTCCAACGAGCTCATCTCTCGTGA 3939540 Query 1456307 CGA-AGTTTTCACCCC 1456321 ||| || ||||| || Sbjct 3939541 CGAGGGTCTTCACACC 3939556 Score = 158 bits (174), Expect = 2e-32 Identities = 352/527 (67%), Gaps = 1/527 (0%) Strand=Plus/Minus Query 332810 ACCTTTTCGGCGGCGACAATCTCGCGCAGGCGACCGGCGATTTGGGCGTCAGTGAGGCGC 332869 ||||||||||| ||| ||||| |||||| | ||| || ||||| || || Sbjct 3019604 ACCTTTTCGGCCTCGATAATCTGCATCAGGCGCTTGACGACCTGCGCGTCGGTCAGTTTG 3019545 Query 332870 ACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTGTTG 332929 | ||||||||||||| || | |||||| | |||||||| | | ||| |||| Sbjct 3019544 GCGTAGCGCAGGATGGCGCATCTCGACTGCAGCGGCTCGATGATCTTGTTGGACTGGTTG 3019485 Query 332930 CAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGT 332989 ||||| | ||| || || ||||| |||| | |||||||||| ||||||||||| Sbjct 3019484 CAGGCAAAGGCGAAGCGGGTCGTGTTGGAGTAGATTTCCATGGTACGGCGGAGGGCCTGC 3019425 Query 332990 TGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGC 333049 || || ||| || | || |||||| |||||||| |||| || ||||||||| || Sbjct 3019424 TGCGCGCCCGAGGTCATGCTGTCGGCTTCGTCGAGAATGACGAGCTTGTGGCGGCCAGCA 3019365 Query 333050 GGCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTCCACGCCG 333109 || || || | ||| ||| | ||||| |||||||||||||| | ||| Sbjct 3019364 GGGAGTGTGACTTTCTTCTGGGCAAAGCCCTTGATTCGGTTGCGCACGACGTCGATACCG 3019305 Query 333110 CGCTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCGGCCGCACCCAAGAGGACG 333169 |||||||| |||||||| ||||| |||||||| | | | | || | || || Sbjct 3019304 CGCTCGTCACTGGCGTTGAGCTCGAGAACGGCCTCCTTGTACGTGTCGCCGAGCAGTTCG 3019245 Query 333170 CGCGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGCGGACCCGCCAGCAAGAGG 333229 || |||||||| || || ||||||| || | || ||| || | | | || | Sbjct 3019244 CGGGCCAGGCAGAGGACACTGCTGGTCTTTCCGATACCAGGCATGCCGGAGATGATGACG 3019185 Query 333230 TTGGGCATGTTGCCGTCGGCGGCCAGCGCCTTGAGGTAGGCAACGGCGTGCTCGTTGCCG 333289 | |||||||| || || ||| | ||||||| ||| || | |||||||| Sbjct 3019184 TGCGGCATGTTCCCTTCCTTGGCGATGATCTTGAGGCGCTCAATGGTTTCGACGTTGCCG 3019125 Query 333290 ACAATGTCGTCGAGCACCATTGGGCGGTACTTTTCGATCC-ATGGGA 333335 || | || ||||| | | || ||||| || || | || |||||| Sbjct 3019124 ACTACATCATCGAGGAAGACGGGTCGGTATTTCTCAACCCTATGGGA 3019078 Score = 143 bits (158), Expect = 4e-28 Identities = 335/503 (67%), Gaps = 17/503 (3%) Strand=Plus/Minus Query 259680 AGCACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACT 259739 ||||||| |||| || ||| ||||||| | ||| ||| ||||| |||| ||||| Sbjct 557595 AGCACAAAGAGGAGCTTGACTCTGCCATTGTCTACGACCGTGACTTCAACTACCAGTACT 557536 Query 259740 TTGGTCTGGCGAC-CTTGCGCCGGTCCTACCTGACCAAAGTGCGCGATATTGTCGTCGAG 259798 | || | ||| |||| || | || |||||| ||| | || | |||||||| Sbjct 557535 TCGGCTTCAAGACTCTTGAGC-GCTCATACCTGCTCAAGATTGACGGCAAGATCGTCGAG 557477 Query 259799 CGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGAC 259858 || |||||| | ||| ||||| | ||||| | || ||| |||| ||| Sbjct 557476 CGTCCCCAGCACATGATCATGAGAGTCGCTGTCGGT-ATTTGGGGT-----------GAC 557429 Query 259859 AATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCA 259918 || | |||| || |||| |||||| | |||||| | |||| |||||| Sbjct 557428 AACA---TCGAGCGTGTTCTCGAGACCTACAACCTCATGTCTAACAAGTTCTTCACCCAT 557372 Query 259919 GCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTG 259978 || | || || ||||| || ||||| || || | ||| ||| || ||||| || Sbjct 557371 GCCTCCCCTACCCTCTTCAACGCCGGTACACCCCAGTGCCAGCTTTCTTCCTGCTTCTTG 557312 Query 259979 TTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTC 260038 | |||||||||| ||| || ||||| || || || || |||||| || || | Sbjct 557311 GTTGACATGAAGGAGGATAGCATTGAGGGTATTTACGATACCCTCAAGACCTGTGCCATG 557252 Query 260039 ATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCC 260098 ||||||||| ||| || ||||| ||| | ||| ||| | || ||| | ||| | Sbjct 557251 ATCTCCAAGATGGCTGGTGGCATTGGTCTCAACGCCCACCGCATCCGTGCCACAGGCTCT 557192 Query 260099 TACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAAC 260158 ||| | || || |||||||| |||||||| | | |||||| | || || || ||| Sbjct 557191 TACATCGCTGGTACCAACGGTACCTCCAACGGTGTCATCCCCATGTTGCGTGTCTTCAAC 557132 Query 260159 GACACGGCGCGCTACGTCGACCA 260181 |||| || |||||||||||||| Sbjct 557131 AACACCGCCCGCTACGTCGACCA 557109 Score = 107 bits (118), Expect = 3e-17 Identities = 181/255 (71%), Gaps = 8/255 (3%) Strand=Plus/Plus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 |||||| || || ||| || ||| | ||||| | | |||| | || || | ||| Sbjct 3939620 ATCATCACTGACGCTGTCACCATTGAGCAGGAGTTCCTTACCGAGGCTCTTCC--TTGCG 3939677 Query 1456583 CTCA--TCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCG 1456640 ||| ||||||||||||||| | |||||| ||||||||||| || ||||| || || Sbjct 3939678 CTCTGCTCGGCATGAACGCCAAC-CTCATGAAGCAGTACATTGAGTTC-GTCGCTGATCG 3939735 Query 1456641 CCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGA 1456700 || |||| || || ||| || ||||| ||| | | ||||||| ||| | | Sbjct 3939736 TCTCCTCGTCGCTCTTGGCAACG-AGAAGATTTACAAGTCCACCAACCCCTTCGACTTCA 3939794 Query 1456701 TGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGTACG 1456759 ||||| ||||| || | |||||||||||||| |||||| || | |||||||||| Sbjct 3939795 TGGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGCGAGTACC 3939854 Query 1456760 CCAAGGCCGGCGTCA 1456774 |||||||| |||| Sbjct 3939855 AGAAGGCCGGTGTCA 3939869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177808692252212