Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Torrubiella_20hemipterigena_20[genbank_20GCA_5F000825705.1_202014- 12-05] 26 sequences; 28,476,206 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1 201 1e-46 >seq1 Length=8525130 Score = 201 bits (222), Expect = 1e-46 Identities = 899/1399 (64%), Gaps = 39/1399 (3%) Strand=Plus/Plus Query 110706 GGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGG 110765 |||| ||||| | ||||| || || ||||| ||||| || || | || || | ||| | Sbjct 556093 GGTAAATGTTGGAAGTGTAGGGCTCGAAGCACTCATTGTTGCCAAGAATCTGCGAGGTAG 556152 Query 110766 AGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTT 110825 | || || ||||| || || | ||| | | ||| || | ||| | |||||||| | | Sbjct 556153 ATGCAGTAGGCATGGGAGCAAGCAACAAAGAGTTGCGGATACCGTGCTCCTTGACCTGCT 556212 Query 110826 CCTTGAGAACATCCCAGTCGTAGTTGA-GCTTGGTTTCACCTTCCCACATGTCAAACTGA 110884 ||||||| |||||| || || | ||| || || || |||| ||||||| || || Sbjct 556213 CCTTGAGGCTATCCCACTCCCAGAGGTCGCTGGGCTTGACATTCC-ACATGTCGAATTGG 556271 Query 110885 AGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCC 110944 || | || | || |||||||| |||| || || |||| ||| | | | ||| Sbjct 556272 AGGATACCCTCAGAGGCGGGAGAGCCCTTGAAAGTAGAGTAGGGACCCTCTTCCTTGGCC 556331 Query 110945 AATT-CACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 111003 || | ||||| || | || ||||| || ||||| || || || | |||| Sbjct 556332 AACTGCACAGAG-GCAGTGACGGCAGCGTGGTAGATGGTCTCGAAAATCTGCTTGTTCAG 556390 Query 111004 CTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAA-ATAAATACATCCGCGAGAC 111062 ||| || ||| || || || | | || | | | | || | || || |||| Sbjct 556391 CTCACGAGCCTCAGGGGACTCGAAGGGG-AGACGTAGAGCGAGGAAGGCGTCAGCAAGAC 556449 Query 111063 CTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGG 111122 | |||||||| | |||||| || | ||| ||||| || || || || || ||||| Sbjct 556450 CCTGAACACCGACACCAATGGGACGGTGACGCATGTTGCTGTTACGAGCCTCCTGAACGG 556509 Query 111123 GATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCAT 111182 | || || |||||||| ||| | || | ||||| || |||| ||||| Sbjct 556510 GGTAGTGGTTGACGTCAATGATCTTGTTCAAGTTGCGGACAACAACCTGGGTGACTTCAT 556569 Query 111183 GAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACAT---ACTTTGGAAGGGCGA 111239 | || || | | ||| | ||| ||| | | | || | ||||| || | Sbjct 556570 GGAGCTTCTTGAAGTCATACTTGCC---CTCGTTGTAGTCAACGAAAGCAGGAAGAGCAA 556626 Query 111240 TTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTAC 111299 || || | ||||| ||||| |||||| | |||||| | ||| || || | Sbjct 556627 GGGAAGCAAGGTTGCAGACAGCGACCTCATCAGGGGCACAGTACTCGATAATCTCAGTGC 556686 Query 111300 ATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCAT 111359 | | |||||| || || || ||||| ||||| ||||| ||||| |||||| | Sbjct 556687 AGAGGTTGGAGCTGCGGATGGTACCCAAGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGT 556746 Query 111360 CCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA 111419 |||||||||||||| |||| | || ||||| ||||| | | || || || | ||||| Sbjct 556747 CCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGAGCCTCAAGGATGGCGTACCAAA 556806 Query 111420 -CATCGGCGGCTGGTACAATGGCGTTG--GCC-CGTCCCTCCGCCTCGTACTTTGTGTAG 111475 | || | | || | |||| ||| ||| || ||||| ||||||||||| ||| Sbjct 556807 GCTTCTGAGCCTTG----ATGGTCTTGCGGCCACGGCCCTCAGCCTCGTACTTCTCGTAC 556862 Query 111476 AGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAA 111535 ||||| || || |||||||| |||| || || || || || || || | Sbjct 556863 AGGGCCTCGAATTCCTCACCGTAGCAATCGGCAAGGCCAGGGCACTCGTTGGGGCACATG 556922 Query 111536 AGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGAT 111595 || | ||| | || | |||||| |||||||||||||| || |||||||| || | Sbjct 556923 AGGGTCCACTCTCCGTTCTTCTCAACACGCTTCATGAAAAGATCGGGAATCCAGAGAGCA 556982 Query 111596 GAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAA 111654 |||||||| | ||| || | ||||| | ||| || || || | |||||||| Sbjct 556983 AGGAAGAGATCACGGGCACGGA-CTTCTTCCTTACCATGATTCTTGCGAAGGTCAAGGAA 557041 Query 111655 CTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC-- 111712 ||| | || ||| |||||||| |||||||| |||| |||| | || ||||| Sbjct 557042 CTCAAAGACATCTGCGTGCCAGGGCTCAAGGTAGATGGCGAAGGCACC---GGGACGCTT 557098 Query 111713 ----CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAAT 111768 ||| |||| | || ||||| || ||| ||| || || || | ||| || || | Sbjct 557099 GTTACCACCTTGGTCGACGTAGCGGGCGGTGTTGTTGAAGACACGCAACATGGGGATGAC 557158 Query 111769 ACCATCTGATTGACCATTTGT-CCCCCGA-ATACGAGATTTATTGGCTCTCACATCATGG 111826 ||| | || ||| || || || ||| || ||| | |||| | | ||| Sbjct 557159 ACCGTTGGAGGTACCGTTGGTACCAGCGATGTAAGAGCCT--GTGGCACGGATGCGGTGG 557216 Query 111827 ATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCA 111886 || | ||||| || |||||| ||| ||||| ||||| | | || || | Sbjct 557217 GCGTTGAGACCAATGCCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGGGTATCG 557276 Query 111887 TAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGT 111946 || ||||| | || |||||||| || | | | |||||| || | ||| | Sbjct 557277 TAAATACCCTCAATGCTATCCTCCTTCATGTCAACCAAGAAGCAGGAAGAAAGCTG-GCA 557335 Query 111947 CT-TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACA 112004 || |||||||| || ||||||||||| || | || || |||| | || | | |||| Sbjct 557336 CTGGGGTGTACCGGCGTTGAAGAGGGTAGGGGAGGCATGGGTGAAGA-ACTTGTTAGACA 557394 Query 112005 TCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCC 112064 | || ||| ||||| | ||| || |||| || || || |||| ||||| | Sbjct 557395 TGAGGTTGTAGGTCTCGAGAACACGCTCGATGTTGTCACCCCAAATACCGACAGCGACTC 557454 Query 112065 GCATGAACATGTACTGTGG 112083 ||||| ||||| ||| || Sbjct 557455 TCATGATCATGTGCTGGGG 557473 Score = 89.7 bits (98), Expect = 6e-13 Identities = 146/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| || ||| |||||||| || || || || || || || |||||| ||||| Sbjct 3939565 GGCAAAGTCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACC 3939506 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 ||||||||||| |||||||| | ||| | || | | || | || ||||||||||| Sbjct 3939505 GGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCAGAGAAGAAGAT 3939446 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGG-AGCGAGACTTTGCATCAA 122836 |||||| || ||||| |||| || || | || |||| || | ||| || | Sbjct 3939445 ACCCTCGACGGCAGCAAAGGCAACGAGACGCTGAGCAAAGGTAGAG-TTCTTGTCAGAGA 3939387 Query 122837 ACCATTTCATTGCCCATTTCGCCTTCTT 122864 ||| |||| ||||| | |||||||| Sbjct 3939386 TCCACTTCAGGGCCCAGTCGGCCTTCTT 3939359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031795889600