Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Torrubiella_20hemipterigena_20[genbank_20GCA_5F000825705.1_202014- 12-05] 26 sequences; 28,476,206 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1 313 3e-80 seq3 176 5e-39 seq7 167 3e-36 >seq1 Length=8525130 Score = 313 bits (346), Expect = 3e-80 Identities = 933/1424 (66%), Gaps = 48/1424 (3%) Strand=Plus/Plus Query 80356 AACTCTCCCGCGAGGGTGCGACGCAGATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCG 80415 ||||| || || | | || ||| | || | ||| | |||||| ||||| || ||| Sbjct 556068 AACTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGAAGTGTAGGGCTCGAAGCACTCA 556127 Query 80416 TTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGGGCCGACCAACAGTGAATTC 80475 ||||| || || ||||| | || || || ||||| || | | ||||| || || Sbjct 556128 TTGTTGCCAAGAATCTGCGAGGTAGATGCAGTAGGCATGGGAGCAAGCAACAAAGAGTTG 556187 Query 80476 CGCAGGCCGTGCTTCTTGATATCCTCGCGCAAATCTGACCAAAAATCAACCCCAA----C 80531 || | ||||||| ||||| | ||| | | || || || |||| | Sbjct 556188 CGGATACCGTGCTCCTTGACCTGCTC-CTTGAGGCTATCC------CACTCCCAGAGGTC 556240 Query 80532 GCTG----TGACC--CCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGC 80585 |||| |||| |||||||||| || | ||| ||||| || || ||||| ||| Sbjct 556241 GCTGGGCTTGACATTCCACATGTCGAATTGGAGGATACCCTCAGAGGCGGGAGAGCCCTT 556300 Query 80586 GAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCT-CACACGACTCCATAAGGGCCGCGT 80644 ||| || ||| || ||||| |||||||| || |||| || | | | ||| |||| Sbjct 556301 GAAAGTAGAGTAGGGACCCTCTTCCTTGGCCAACTGCACA-GAGGCAGTGACGGCAGCGT 556359 Query 80645 GATAAATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACA 80704 | || ||| ||| || | |||||||| | || |||| ||| ||||| | | Sbjct 556360 GGTAGATGGTCTCGAAAATCTGCTTGTTCAGCTCACGAGCCTCAGGGGACTCGAAGGGGA 556419 Query 80705 AGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGC 80764 | | | ||| ||||||| || |||||||| |||| | || || ||||| | Sbjct 556420 GACGTAGAGCGAGGAAGGCGTCAGCAAGACCCTGAACACCGACACCAATGGGACGGTGAC 556479 Query 80765 GCTTGTTCGATCGCTCG-GCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTC 80823 || |||| | | || |||||| ||| ||||| ||| || |||| |||| Sbjct 556480 GCATGTT-GCTGTTACGAGCCTCCTGAACGGGGTAGTGGTTGACGTCAATGATCTTGTTC 556538 Query 80824 AGGTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATTGGTTCCCC 80883 | |||||| ||||||| | || || ||||| || |||| ||||| | | | | | Sbjct 556539 AAGTTGCGGACAACAACCTGGGTGACTTCATGGAGCTTCTTGAAGTCATACTTGCCCTCG 556598 Query 80884 TTC------ACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCA 80937 || || || || ||||| ||||| || || ||||| || || ||||| ||| Sbjct 556599 TTGTAGTCAACGAAAGCAGGAAGAGCAAGGGAAGCAAGGTTGCAGACAGCGACCTCATCA 556658 Query 80938 G---CATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGG 80994 | || | ||| ||||| || || ||||| | || || || ||||||| | Sbjct 556659 GGGGCA-CAGTA--CTCGATAATCTCAGTGCAGAGGTTGGAGCTGCGGATGGTACCCAAG 556715 Query 80995 TTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTC 81054 || |||||||| |||| |||||| |||||||||| |||| | ||| |||| ||| Sbjct 556716 TTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTAGAGCATGAAGGGGTTACCAGTC 556775 Query 81055 TCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAAT 81114 ||| ||| | || |||||||||| ||||| || | ||||||| ||||||| Sbjct 556776 TCGGTCTGAGCCTCAAGGATGGCGTACCAAAGCTTCTGAGCCTTGATGGTCTTGCGGCCA 556835 Query 81115 TTGCCTTCGGCCACATACTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTG 81174 ||| || ||| | ||||| |||| | ||||| | |||||| || | Sbjct 556836 CGGCCCTCAGCCTCGTACTTCTCGTACAGGGCCTCGAATTCCTCACCGTAGCAATCGGCA 556895 Query 81175 AGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTC 81234 ||| | ||||||||||| |||||||| ||| ||| || || ||||| ||| |||| Sbjct 556896 AGGCCAGGGCACTCGTTGGGGCACATGAGGGTCCACTCTCCGTTCTTCTCAACACGCTTC 556955 Query 81235 ATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCA 81294 |||||| || || |||||||| || ||| || || ||| || | || || | | Sbjct 556956 ATGAAAAGATCGGGAATCCAGAGAGCAAGGAAGAGATCACGGGCACGGACTTCTTCCTTA 557015 Query 81295 CCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATAC 81354 || || || ||| | || || || || | || || || ||||| ||||| || || Sbjct 557016 CCATGATTCTTGCGAAGGTCAAGGAACTCAAAGACATCTGCGTGCCAGGGCTCAAGGTAG 557075 Query 81355 ACGGCGATCGACCCCTTGCGACG------GCCACCCTGGTTGACGTAACGGGCAGTCGCG 81408 | ||||| | || | |||| ||||| |||| |||||| ||||| || | Sbjct 557076 ATGGCGAAGGCACC---GGGACGCTTGTTACCACCTTGGTCGACGTAGCGGGCGGTGTTG 557132 Query 81409 TTAAATACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGC 81468 || || ||||||||||| ||||||| ||| | || |||||| ||||| |||| Sbjct 557133 TTGAAGACACGCAACATGGGGATGACACCGTTGGAGGTACCGTTGGTACCAGCGATGTAA 557192 Query 81469 GACCCCTTGGCGCGCA--CCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAA 81526 || || |||| || | | || ||| ||||| |||||||| | | ||| || | Sbjct 557193 GAGCCTGTGGCACGGATGCGGTGGGCGTTG--AGACCAATGCCACCAGCCATCTTGGAGA 557250 Query 81527 TCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAA 81586 || ||||| || | ||| || ||||| ||||| |||||||| | |||||||||| Sbjct 557251 TCATGGCACAGGTCTTGAGGGTATCGTAAATACCCTCAATGCTATCCTCCTTCATGTCAA 557310 Query 81587 GCAAGAAACAGCTTGACATCTGAGGGCT-TTTTGAGCCGGCATTGAACAGTGTTGGGGTC 81645 |||||| ||| || | ||| | || || ||||| ||||| || || |||| Sbjct 557311 CCAAGAAGCAGGAAGAAAGCTG-GCACTGGGGTGTACCGGCGTTGAAGAGGGTAGGGGAG 557369 Query 81646 GCGTGAATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCG 81705 || || |||| | ||| ||||| |||| ||||| || || || || | | Sbjct 557370 GCATGGGTGAAGAACTTGTTAGACATGAGGTTGTAGGTCTCGAGAACACGCTCGATGTTG 557429 Query 81706 TCACCGTGAATACCGATAGCTACACGCATAAACATGTACTGGGG 81749 ||||| |||||||| ||| || | ||| | ||||| |||||| Sbjct 557430 TCACCCCAAATACCGACAGCGACTCTCATGATCATGTGCTGGGG 557473 Score = 123 bits (136), Expect = 3e-23 Identities = 136/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || || ||||| || || || ||||| ||||| || ||||| ||||| || | ||| Sbjct 1347958 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTCGAGGTCGAGTCCTCGGACACCATC 1348017 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | ||| | ||| | || || ||||| |||||||| ||||| || ||||||||||| || Sbjct 1348018 GACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGCATTCCCCCTGACCAGCAGCGCCTG 1348077 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || || ||||| ||||| |||||||||| || ||||| | ||||| || |||| ||| Sbjct 1348078 ATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAAG 1348137 Query 27595 G 27595 | Sbjct 1348138 G 1348138 Score = 105 bits (116), Expect = 8e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 64708 TTTGGTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTC 64767 |||| ||||||||||| || ||||| || || || || ||||| ||||| | || Sbjct 3939407 TTTGCTCAGCGTCTCGTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCTCTGGTGCCTTT 3939466 Query 64768 TGTTCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAG 64827 || || |||||||| || ||||| || || ||||| |||||| | || || |||||| Sbjct 3939467 GCCTCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTGACCTTCTCCAACGAG 3939526 Query 64828 CTGATCTCTCGGGACGAGGGGCTCCACCAAGAATTTGC 64865 || |||||||| |||||||| || ||| || ||||| Sbjct 3939527 CTCATCTCTCGTGACGAGGGTCTTCACACCGACTTTGC 3939564 >seq3 Length=4610873 Score = 176 bits (194), Expect = 5e-39 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || ||||||||||| || || | ||||||||||| | Sbjct 3673418 ATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACGATCACATTGGAGGTTGAGTCTTCT 3673359 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || | ||| | || |||||||| |||||||| |||||||| |||||| Sbjct 3673358 GATACCATCGACAACGTCAAGTCGAAGATTCAGGATAAGGAGGGTATTCCTCCTGACCAG 3673299 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || |||||||||||||| || || |||| || || || | ||||| || Sbjct 3673298 CAACGTCTTATCTTTGCTGGTAAGCAGCTTGAAGATGGCCGCACTCTCTCTGACTACAAC 3673239 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 | || ||||| |||||| ||||| ||| | ||||| |||||||| || Sbjct 3673238 ATTCAGAAGGAGAGCACTCTGCATCTCGTCCTCCGTCTGCGCGGTGGCCA 3673189 Score = 170 bits (188), Expect = 2e-37 Identities = 176/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||||||||| ||||| |||||||||||||| | || ||||||||| Sbjct 3673646 ATGCAAATCTTTGTCAAGACTCTTACTGGCAAGACTATTACATTAGAAGTTGAGTCATCG 3673587 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||| | || || || || |||||||| || ||||| || ||| Sbjct 3673586 GACACAATCGACAATGTCAAGTCAAAGATCCAAGATAAGGAGGGTATCCCTCCTGATCAG 3673527 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 |||||||| || ||||| |||||||| |||||||| | ||| || || ||| ||||| || Sbjct 3673526 CAGCGTCTTATCTTTGCCGGTAAGCAGCTCGAGGACGGTCGCACTCTGAGC-GACTACAA 3673468 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || ||||| || | || ||||||| || ||||| Sbjct 3673467 CATTCAGAAGGAGTCTACTCTGCACTTGGTGCTGCGTCTCCGTGGTGG 3673420 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | ||||| ||||| ||||| || ||||||||||| Sbjct 3673874 ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACCATTACCCTCGAGGTTGAGTCTTCC 3673815 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || | ||| | || || |||||||||||||| || ||||| |||||| Sbjct 3673814 GACACTATTGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCTCCTGACCAG 3673755 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || |||||||| || ||||| || || |||| || ||||| | ||||| || Sbjct 3673754 CAGCGCCTGATTTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTTTCCGACTACAAC 3673695 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| |||||||| || |||||||| || | || || || ||||| Sbjct 3673694 ATCCAGAAGGAATCTACCCTTCATCTCGTTCTCCGCCTCCGTGGTGG 3673648 Score = 154 bits (170), Expect = 2e-32 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||||||||| ||||| || ||||||||||| || | ||||| || | ||| | Sbjct 3674078 ACCGGCAAGACCATTACCCTCGAGGTTGAGTCTTCCGACACCATTGACAACGTCAAGTCC 3674019 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || ||||||||||||||||||||||| || ||||||||||| || ||||| ||||| ||| Sbjct 3674018 AAGATTCAGGACAAGGAGGGAATTCCCCCTGACCAGCAGCGCCTGATTTTCGCTGGCAAG 3673959 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || |||||||||| || ||||| | || || || | || ||||| ||| || || Sbjct 3673958 CAGCTCGAGGATGGCCGCACCCTCTCTGATTACAACATTCAGAAGGAGAGCACCCTCCAC 3673899 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | || ||||| ||||| Sbjct 3673898 CTCGTCCTCCGCCTTCGTGGTGG 3673876 >seq7 Length=1200748 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| ||||| || ||||| || || |||||||| ||||| Sbjct 1041339 ATGCAGATTTTCGTCAAGACCCTTACGGGAAAGACGATCACCCTTGAGGTGGAGTCTTCC 1041398 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||| | || || ||||| |||||||| || || || |||||| Sbjct 1041399 GACACCATTGACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGTATCCCCCCTGACCAG 1041458 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || ||||| ||||| |||||||||| || ||||| | ||||| || Sbjct 1041459 CAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAAC 1041518 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| |||||||| || || ||| | || || || ||||| Sbjct 1041519 ATCCAGAAGGAGTCCACTCTCCACCTTGTCCTCCGCCTGCGTGGTGG 1041565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310214649120