Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Torrubiella_20hemipterigena_20[genbank_20GCA_5F000825705.1_202014- 12-05] 26 sequences; 28,476,206 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq7 181 2e-40 seq3 161 2e-34 seq1 143 6e-29 >seq7 Length=1200748 Score = 181 bits (200), Expect = 2e-40 Identities = 169/215 (79%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| ||||||||||| || |||||||| || || | ||||| | ||||| Sbjct 1041550 AGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCC 1041491 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| ||||| || |||||||| || | || ||||| ||| Sbjct 1041490 TCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATACCCTCCTTATCC 1041431 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || |||||||| || || ||||| || ||||||||| Sbjct 1041430 TGGATCTTGGACTTGACATTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 1041371 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 |||||||| || ||||| || || | |||||| || Sbjct 1041370 TTTCCCGTAAGGGTCTTGACGAAAATCTGCATCTT 1041336 >seq3 Length=4610873 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || || |||||| ||| || || ||||| || || | || || | |||||| Sbjct 3673207 AGGACGAGATGCAGAGTGCTCTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCT 3673266 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || || |||||||| ||||| ||||||||||||| || ||||| ||| Sbjct 3673267 TCAAGCTGCTTACCAGCAAAGATAAGACGTTGCTGGTCAGGAGGAATACCCTCCTTATCC 3673326 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || ||||| |||||||| ||||| |||||||| | ||||||||| Sbjct 3673327 TGAATCTTCGACTTGACGTTGTCGATGGTATCAGAAGACTCAACCTCCAATGTGATCGTC 3673386 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | |||||| Sbjct 3673387 TTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 3673418 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || ||||| || || || || |||||||| || || | |||||| | |||||| Sbjct 3673663 AGAACGAGATGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCT 3673722 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || || || ||||| || ||||||||||| | || ||||||||| Sbjct 3673723 TCAAGCTGCTTGCCGGCAAAAATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCC 3673782 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| || || ||||| || ||||||||||| || || ||| Sbjct 3673783 TGGATCTTCGACTTGACGTTGTCAATAGTGTCGGAAGACTCAACCTCGAGGGTAATGGTC 3673842 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || | |||||| || || | |||||| Sbjct 3673843 TTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 3673874 Score = 154 bits (170), Expect = 3e-32 Identities = 154/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| ||||| || ||| ||| || || ||||| ||||| | ||||| Sbjct 3673881 ACGAAGGCGGAGGACGAGGTGGAGGGTGCTCTCCTTCTGAATGTTGTAATCAGAGAGGGT 3673940 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || ||||||||||| ||||| || ||||| || |||||||| |||| ||| Sbjct 3673941 GCGGCCATCCTCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGGGGAATTCC 3674000 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||| ||||| || ||||| || |||||||| || ||||||||||| Sbjct 3674001 CTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCAACCTCGAG 3674060 Query 211073 AGTGATCGTCTTTCCCGTGA 211092 || || ||||| || |||| Sbjct 3674061 GGTAATGGTCTTGCCGGTGA 3674080 >seq1 Length=8525130 Score = 143 bits (158), Expect = 6e-29 Identities = 139/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || | ||||| | ||||| || ||||||||||| |||||||| Sbjct 1348136 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATC 1348077 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 ||||| || |||||||| |||| || ||||| ||||||||||| || || || ||| Sbjct 1348076 AGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTATCCTGGATCTTGGACTTGACATTGTCG 1348017 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 |||||||| ||| || |||||||| || || ||||| ||||| || ||||| || || Sbjct 1348016 ATGGTGTCCGAGGACTCGACCTCGAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAA 1347958 Score = 84.2 bits (92), Expect = 5e-11 Identities = 183/271 (68%), Gaps = 6/271 (2%) Strand=Plus/Plus Query 178088 CCAAAGTTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGGGC 178144 || |||||||| ||||||||||| | |||| ||| || ||||| |||||||| Sbjct 556710 CCCAAGTTCTTCTGGTTGCTCTTGCGGTTGCAG-TGG--TCCTTGTAGAGCATGAAGGGG 556766 Query 178145 ATTCCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTC 178204 | || ||| | |||||| | || ||| | |||||||| ||| || || ||| Sbjct 556767 TTACCAGTCTCGGTCTGAGCCTCAAGGATGGCGTACCAAAGCTTCTGAGCCTTGATGGTC 556826 Query 178205 TTTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAG 178264 || | | || ||| ||||||||| | ||| || ||||||||||| || ||| Sbjct 556827 TTGCGGCCACGGCCCTCAGCCTCGTACTTCTCGTACAGGGCCTCGAATTCCTCACCGTAG 556886 Query 178265 ACATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTC 178324 ||| | || || || ||| |||||||| | ||| |||||| |||| | || Sbjct 556887 CAATCGGCAAGGCCAGGGCACTCGTTGGGGCACATGAGGGTCCACTCTCCGTTCTTCTCA 556946 Query 178325 ACTCGTTTCATGAAGAGGTCAGAGGTCCAGA 178355 || || |||||||| || || | |||||| Sbjct 556947 ACACGCTTCATGAAAAGATCGGGAATCCAGA 556977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151613857490