Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Torrubiella_20hemipterigena_20[genbank_20GCA_5F000825705.1_202014- 12-05] 26 sequences; 28,476,206 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq3 187 5e-42 seq7 168 1e-36 seq1 147 5e-30 seq4 84.2 5e-11 >seq3 Length=4610873 Score = 187 bits (206), Expect = 5e-42 Identities = 178/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || ||||| | || ||| || |||||||||||||| | Sbjct 3673647 ACCACCACGGAGGCGGAGAACGAGATGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGA 3673706 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| ||||||||||| || || || || |||||||| |||| || || |||||| || Sbjct 3673707 AAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAAATCAGGCGCTGCTGGTCAGGAGG 3673766 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| | || ||| | || |||||||| |||| || || Sbjct 3673767 GATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCAATAGTGTCGGAAGACTCAAC 3673826 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| || || ||||| || ||||||||||| ||||| |||||||| Sbjct 3673827 CTCGAGGGTAATGGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 3673874 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| ||||| || || || ||||| | ||||| || || || ||||||||||||| Sbjct 3673192 CCACCGCGCAGACGGAGGACGAGATGCAGAGTGCTCTCCTTCTGAATGTTGTAGTCAGAG 3673251 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||||||||| || || || || || |||||||| | |||||| |||||| ||| Sbjct 3673252 AGAGTGCGGCCATCTTCAAGCTGCTTACCAGCAAAGATAAGACGTTGCTGGTCAGGAGGA 3673311 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||||||||| || || ||||| | || ||| | ||||| || || |||| || || Sbjct 3673312 ATACCCTCCTTATCCTGAATCTTCGACTTGACGTTGTCGATGGTATCAGAAGACTCAACC 3673371 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||||||||| || || | ||||| ||||| |||||||| Sbjct 3673372 TCCAATGTGATCGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 3673418 Score = 138 bits (152), Expect = 2e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || || || | ||||| || || || |||||||| |||| Sbjct 3673875 ACCACCACGAAGGCGGAGGACGAGGTGGAGGGTGCTCTCCTTCTGAATGTTGTAATCAGA 3673934 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || || || || |||| || || |||||| || Sbjct 3673935 GAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGGGG 3673994 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| || ||||| | || ||| | || || ||||| |||| || || Sbjct 3673995 AATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCAAC 3674054 Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075 ||||| || || ||||| || || Sbjct 3674055 CTCGAGGGTAATGGTCTTGCCGGT 3674078 Score = 136 bits (150), Expect = 8e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || |||| || | || || || || ||||||||||| Sbjct 3673419 ACCACCACGGAGACGCAGCACCAAGTGCAGAGTAGACTCCTTCTGAATGTTGTAGTCGCT 3673478 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||| || ||||| || || || ||||||||||| | ||| || || ||| || Sbjct 3673479 CAGAGTGCGACCGTCCTCGAGCTGCTTACCGGCAAAGATAAGACGCTGCTGATCAGGAGG 3673538 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||| ||||||||||||| || || | ||||| |||||||| | || || Sbjct 3673539 GATACCCTCCTTATCTTGGATCTTTGACTTGACATTGTCGATTGTGTCCGATGACTCAAC 3673598 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| | || || ||||| || || | |||||| || || || ||||| Sbjct 3673599 TTCTAATGTAATAGTCTTGCCAGTAAGAGTCTTGACAAAGATTTGCAT 3673646 >seq7 Length=1200748 Score = 168 bits (186), Expect = 1e-36 Identities = 176/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || || || || | ||| || || |||||||||||||| | Sbjct 1041566 ACCACCACGCAGGCGGAGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGA 1041507 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || || || ||||||| || || |||||| || Sbjct 1041506 GAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGG 1041447 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||| || |||||||| | || || | || || ||||| |||| || || Sbjct 1041446 GATACCCTCCTTATCCTGGATCTTGGACTTGACATTGTCAATGGTGTCGGAAGACTCCAC 1041387 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || ||||||||||| ||||| | ||||| ||||| |||||||| || Sbjct 1041386 CTCAAGGGTGATCGTCTTTCCCGTAAGGGTCTTGACGAAAATCTGCATCTT 1041336 >seq1 Length=8525130 Score = 147 bits (162), Expect = 5e-30 Identities = 140/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | || |||||||||||||| || || || || || |||||| Sbjct 1348136 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATC 1348077 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 | || || |||||| ||||| |||||||| || |||||||| | || || | ||| Sbjct 1348076 AGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTATCCTGGATCTTGGACTTGACATTGTCG 1348017 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || |||||||| | ||||| ||||| || || ||||||||||||| ||||| ||||| Sbjct 1348016 ATGGTGTCCGAGGACTCGACCTCGAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAA 1347958 Score = 141 bits (156), Expect = 2e-28 Identities = 180/248 (73%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 230163 ATCGTCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGT 230222 ||| |||| || | || | | ||| |||||||| || ||| ||| |||||||| | Sbjct 3939620 ATCATCACTGACGCTGTCACCATTGAGCAGGAGTTCCTTACCGAGGCTCTTCCTTGCGCT 3939679 Query 230223 CTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATT 230282 || |||||||||| || | |||||| ||| || || || ||||| ||||||||| | Sbjct 3939680 CTGCTCGGCATGAACGCCAACCTCATGAAGCAGTACATTGAGTTCGTCGCTGATCGTCTC 3939739 Query 230283 TTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAG 230342 |||| || || || ||||||| | || || |||| |||||||||| || |||||| Sbjct 3939740 CTCGTCGCTCTTGGCAACGAGAAGATTTACAAGTCCACCAACCCCTTCGACTTCATGGAG 3939799 Query 230343 CTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGG 230402 ||| || || || || || ||||||||||| |||||||| |||| || || | | Sbjct 3939800 AACATCTCCCTTGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGCGAGTACCAGAAG 3939859 Query 230403 CCCGGTGT 230410 ||||||| Sbjct 3939860 GCCGGTGT 3939867 >seq4 Length=2750940 Score = 84.2 bits (92), Expect = 5e-11 Identities = 198/291 (68%), Gaps = 10/291 (3%) Strand=Plus/Minus Query 274430 CACGATGGGCGTGATAAATTTCTTCAGGAAACCTGGAATTTCTAGCAGACTGGGGAAAC- 274488 ||||| |||||||||||||| | | ||| | ||||| | ||||| ||||| Sbjct 832006 CACGACGGGCGTGATAAATTCTCTGAAGAAGTCCGGAATCTTAAGCAGTGACGGGAACTG 831947 Query 274489 AACTATGGAAAAAGTTCATGACAAGACC--TGATATGTGAGTTCCGTCAACGTCGGCATC 274546 |||| || | ||||| || | ||||| ||||||| | | || || || ||| Sbjct 831946 AACT-TGAAGGAAGTTGATAAGTAGACCCTTGATATG--ACTACCATCGTGATCCTGATC 831890 Query 274547 TGTCATGATCATAACATGTCCATACCGAAGCGAGGAAGTATCTTTATACAACTTCCCTGT 274606 | ||||||||| | ||| || || || ||||| ||||| | |||| | || ||| Sbjct 831889 GGCCATGATCATCAGATGACCGTATCGCAGCGACTTCGTATCAGTGTACA-CAGCCTTGT 831831 Query 274607 --TTGAAGCCCAAGAATTTGCTTGAGAGCGGTGATTTCTTCGTTCTTTGTGATACTCGCC 274664 || ||||| | ||||| |||||| | ||||| | |||||||||||| | Sbjct 831830 GCTTCAAGCCAAGGAATT-GCTTGATATTTTGAATTTCCTGGTTCTTTGTGATCTGATCA 831772 Query 274665 ACAGAAGCATCACGTACGTTCAGCAACTTACCGCGGAGAGGGAAAACGCCA 274715 | || || || || ||||| |||| ||||| | |||||||||||| ||| Sbjct 831771 ATTGATGCGTCTCGAACGTTTAGCATTTTACCTCTGAGAGGGAAAACACCA 831721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738851305004