Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Torrubiella_20hemipterigena_20[genbank_20GCA_5F000825705.1_202014- 12-05] 26 sequences; 28,476,206 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq3 149 2e-30 seq7 147 5e-30 seq1 127 5e-24 >seq3 Length=4610873 Score = 149 bits (164), Expect = 2e-30 Identities = 157/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||| | || ||||| || || ||||||||||| || || ||| Sbjct 3673871 CAGATCTTCGTCAAGACTTTGACCGGAAAGACCATTACCCTCGAGGTTGAGTCTTCCGAC 3673812 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| ||||| |||||||| || || |||||||| |||||||| Sbjct 3673811 ACTATTGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCTCCTGACCAGCAG 3673752 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || ||||| || ||||| |||||||| | || ||| |||| || ||| || Sbjct 3673751 CGCCTGATTTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTTTCCGACTACAACATC 3673692 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || ||||| || || ||||| ||| Sbjct 3673691 CAGAAGGAATCTACCCTTCATCTCGTT 3673665 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || ||||| || || |||||||| | ||||| || || || Sbjct 3673415 CAGATTTTCGTCAAGACCCTCACCGGCAAGACGATCACATTGGAGGTTGAGTCTTCTGAT 3673356 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||||||||| || || || || ||||| ||||||||| Sbjct 3673355 ACCATCGACAACGTCAAGTCGAAGATTCAGGATAAGGAGGGTATTCCTCCTGACCAGCAA 3673296 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| || || || ||||| |||||||| | ||||| | || || ||| | Sbjct 3673295 CGTCTTATCTTTGCTGGTAAGCAGCTTGAAGATGGCCGCACTCTCTCTGACTACAACATT 3673236 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || |||||||| || Sbjct 3673235 CAGAAGGAGAGCACTCTGCATCTCGT 3673210 Score = 116 bits (128), Expect = 9e-21 Identities = 127/169 (75%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| || || || || ||||||||||| || || |||||||| || |||||||| Sbjct 3674080 TCACCGGCAAGACCATTACCCTCGAGGTTGAGTCTTCCGACACCATTGACAACGTCAAGT 3674021 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 |||||||||||||| || ||||| || || |||||||| || || || ||||| || | Sbjct 3674020 CCAAGATTCAGGACAAGGAGGGAATTCCCCCTGACCAGCAGCGCCTGATTTTCGCTGGCA 3673961 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGA 178111 | |||||||| ||||| | || || | ||||| ||| | || || || Sbjct 3673960 AGCAGCTCGAGGATGGCCGCACCCTCTCTGATTACAACATTCAGAAGGA 3673912 >seq7 Length=1200748 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || || || ||||| ||||||||||| |||||||| || ||| Sbjct 1041342 CAGATTTTCGTCAAGACCCTTACGGGAAAGACGATCACCCTTGAGGTGGAGTCTTCCGAC 1041401 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| ||||| ||||| || || || ||||| || |||||||| Sbjct 1041402 ACCATTGACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGTATCCCCCCTGACCAGCAG 1041461 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || |||||||| ||||| | || || |||| || ||| || Sbjct 1041462 CGCCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAACATC 1041521 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || ||||| Sbjct 1041522 CAGAAGGAGTCCACTCTCCACCTTGT 1041547 >seq1 Length=8525130 Score = 127 bits (140), Expect = 5e-24 Identities = 136/180 (76%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988 ||||||||| || || || || || || || ||||||||||| || ||| |||||||| Sbjct 1347957 TTTCGTGAAGACCCTGACGGGTAAGACCATTACCCTCGAGGTCGAGTCCTCGGACACCAT 1348016 Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048 ||| || ||||| ||||| ||||| || || || || || || |||||||| || || Sbjct 1348017 CGACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGCATTCCCCCTGACCAGCAGCGCCT 1348076 Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 |||||||| || || |||||||| ||||| | || || |||| || ||| |||| || Sbjct 1348077 GATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAA 1348136 Score = 86.0 bits (94), Expect = 2e-11 Identities = 182/270 (67%), Gaps = 4/270 (1%) Strand=Plus/Plus Query 214123 CCAAAGTTTTTCTGGTTGCTTTTGCGGCA--AATGGCATCTTTGTATGCGATGAAAGGCA 214180 || ||||| ||||||||||| |||||| | ||| || ||||| ||||| || Sbjct 556710 CCCAAGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGG--TCCTTGTAGAGCATGAAGGGGT 556767 Query 214181 TTCCCACCTCGACTTGAGCGACAAGAATGTGATGCCAGAGTTCTTGGGCCTTCACGACCT 214240 | || |||| ||||| |||| ||| | ||| || | || ||||| | | || Sbjct 556768 TACCAGTCTCGGTCTGAGCCTCAAGGATGGCGTACCAAAGCTTCTGAGCCTTGATGGTCT 556827 Query 214241 TTTTGGCTCTTCCCTCGTTTTCGTACTTTTCATAAAGAGACTCAAATTCCGAACCGTAGA 214300 | | | | ||||| |||||||| || || || | ||| |||||| ||||||| Sbjct 556828 TGCGGCCACGGCCCTCAGCCTCGTACTTCTCGTACAGGGCCTCGAATTCCTCACCGTAGC 556887 Query 214301 CATCATCAAGACCGGGAGCCTCGTTGGGGCAGAAAAGACTCCATTGTCCATTATCCCTGA 214360 ||| |||| || || |||||||||||| | || |||| | ||| || | | | Sbjct 556888 AATCGGCAAGGCCAGGGCACTCGTTGGGGCACATGAGGGTCCACTCTCCGTTCTTCTCAA 556947 Query 214361 CTCTTTTCATGAAAAGGTCGGAAGTCCAGA 214390 | | ||||||||||| |||| | |||||| Sbjct 556948 CACGCTTCATGAAAAGATCGGGAATCCAGA 556977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730799007044