Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Torrubiella_20hemipterigena_20[genbank_20GCA_5F000825705.1_202014-
12-05] 26 sequences; 28,476,206 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq7 154 1e-32
seq3 140 3e-28
seq1 138 1e-27
seq2 84.2 2e-11
>seq7
Length=1200748
Score = 154 bits (170), Expect = 1e-32
Identities = 176/234 (75%), Gaps = 2/234 (1%)
Strand=Plus/Minus
Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692
|| || || || || || | || || || || ||| ||||||||| ||||| ||||||
Sbjct 1041568 CCACCACCACGCAGGCGGAGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCG 1041509
Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752
||||||||||| | || |||||||||||||| ||||| ||||||||||| ||||| | |
Sbjct 1041508 GAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGG 1041449
Query 41753 GGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTC 41811
|| | | |||||| ||| ||| || ||| || | | | |||||| |||||
Sbjct 1041448 GGGATACCCTCCTTATCCTGGATCTTGGACTT-GACATTGTCAATGGTGTCGGAAGACTC 1041390
Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|||||| | || ||||| || ||||| || ||||| |||||||||||||| ||
Sbjct 1041389 CACCTCAAGGGTGATCGTCTTTCCCGTAAGGGTCTTGACGAAAATCTGCATCTT 1041336
>seq3
Length=4610873
Score = 140 bits (154), Expect = 3e-28
Identities = 170/229 (74%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| ||||| ||||| | || |||||||| |||||||||||||||||||| ||||| ||
Sbjct 3673191 GCCACCGCGCAGACGGAGGACGAGATGCAGAGTGCTCTCCTTCTGAATGTTGTAGTCAGA 3673250
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
||| ||||| | || || |||||||| || || || || || || || ||||| | ||
Sbjct 3673251 GAGAGTGCGGCCATCTTCAAGCTGCTTACCAGCAAAGATAAGACGTTGCTGGTCAGGAGG 3673310
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
|| | |||||| ||| ||| | || | | ||| | | | || || ||||| |
Sbjct 3673311 AATACCCTCCTTATCC-TGAATCTTCGACTTGACGTTGTCGATGGTATCAGAAGACTCAA 3673369
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||||| || ||||| || || || || ||||| ||||||||||||||
Sbjct 3673370 CCTCCAATGTGATCGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 3673418
Score = 134 bits (148), Expect = 1e-26
Identities = 168/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | || ||||| || || |||||||| ||||| ||||||||
Sbjct 3673648 CCACCACGGAGGCGGAGAACGAGATGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAA 3673707
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| | || || |||||||||||||| || ||||||||||| ||||| | ||
Sbjct 3673708 AGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAAATCAGGCGCTGCTGGTCAGGAGGG 3673767
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| || |||||||||| ||| || ||| ||| | | | ||||||| ||||| ||
Sbjct 3673768 ATGCCCTCCTTGTCCTGGATCTTCGACTT-GACGTTGTCAATAGTGTCGGAAGACTCAAC 3673826
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||| | || || || || || |||| ||||| ||||| ||||||||
Sbjct 3673827 CTCGAGGGTAATGGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 3673874
Score = 127 bits (140), Expect = 2e-24
Identities = 109/135 (81%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | || || || || |||||||||||||||||||| || || |||
Sbjct 3673876 CCACCACGAAGGCGGAGGACGAGGTGGAGGGTGCTCTCCTTCTGAATGTTGTAATCAGAG 3673935
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| | || |||||||||||||| ||||| ||||||||||| ||||| | ||||
Sbjct 3673936 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGGGGA 3673995
Query 41756 ACGCTCTCCTTGTCC 41770
| | ||||||||||
Sbjct 3673996 ATTCCCTCCTTGTCC 3674010
Score = 96.9 bits (106), Expect = 3e-15
Identities = 160/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | ||||| ||||| || ||||||||||||||| ||||||
Sbjct 3673420 CCACCACGGAGACGCAGCACCAAGTGCAGAGTAGACTCCTTCTGAATGTTGTAGTCGCTC 3673479
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| |||| ||||||||||| ||||| || || || ||||| || || | ||
Sbjct 3673480 AGAGTGCGACCGTCCTCGAGCTGCTTACCGGCAAAGATAAGACGCTGCTGATCAGGAGGG 3673539
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813
| | |||||| || ||| ||| ||| || | || | ||||| ||||| |
Sbjct 3673540 ATACCCTCCTTATCTTGGATCTTTGACTTGACATTGTCG--ATTGTGTCCGATGACTCAA 3673597
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
| || | || || || || || || || ||||| || || || |||||
Sbjct 3673598 CTTCTAATGTAATAGTCTTGCCAGTAAGAGTCTTGACAAAGATTTGCAT 3673646
>seq1
Length=8525130
Score = 138 bits (152), Expect = 1e-27
Identities = 142/184 (77%), Gaps = 4/184 (2%)
Strand=Plus/Minus
Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732
||||||| ||||| ||||||||||||||||| | || |||||||||||||| ||||| |
Sbjct 1348138 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGA 1348079
Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790
|||||||||| ||||| | ||||| || |||||| ||| ||| || ||| || |
Sbjct 1348078 TCAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTATCCTGGATCTTGGACTTGACATTGT 1348019
Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850
|| | ||||| ||||| ||||| | || || || ||||||||||| ||||| ||
Sbjct 1348018 CG--ATGGTGTCCGAGGACTCGACCTCGAGGGTAATGGTCTTACCCGTCAGGGTCTTCAC 1347961
Query 41851 GAAA 41854
||||
Sbjct 1347960 GAAA 1347957
>seq2
Length=6006343
Score = 84.2 bits (92), Expect = 2e-11
Identities = 87/114 (76%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 85800 CGTATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTGGGCGCCGGGGTC 85859
|| |||||||| || ||||||||||| ||||||| |||||| |||||||| |||
Sbjct 2216476 CGCATCGCACCCCGCTCCGGCCTCGCAGCCAAGCACTTCATCGACACCGGCGCCGGCGTC 2216417
Query 85860 ATCGACGCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCACGGCGAA 85913
|| |||| || |||||||| | |||| | | ||||||||||||| ||||
Sbjct 2216416 ATTGACGAGGATTACCGCGGCGAGGTCAAGGTTCTTCTCTTCAACCACGCCGAA 2216363
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462303849751200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |