Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06-
08] 1,439 sequences; 37,686,724 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq219 159 7e-34
>seq219
Length=54288
Score = 159 bits (176), Expect = 7e-34
Identities = 326/474 (69%), Gaps = 8/474 (2%)
Strand=Plus/Minus
Query 230170 TCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCG-GGAG 230228
|| |||||| |||||||||| |||| | |||||| ||||| || | ||| | ||||
Sbjct 42922 TCCTTTGCCCAGCGTCTCGTTGCCTTTGCTGCTGTTGAGGGTAT-CT-TCTTCAGCGGAG 42865
Query 230229 TTTCTGCG-CCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTA 230287
| ||| ||||||| ||||| ||| | |||| | |||||||| || | || |
Sbjct 42864 CCTTTGCCTCCATCTTCTGGCTCAAGAAGAGAGGTCTCATGCCTGGTCTGACCTTCTCCA 42805
Query 230288 ACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAA 230347
||||| ||||| ||| ||||||||||| || | || | || | | ||
Sbjct 42804 ACGAGCTCATCTCTCGTGACGAGGGTCTGCACACTGACTTTGCTTGCCTGCTCCACTCTC 42745
Query 230348 AGCTCCAGAACAA-GCTACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAA 230406
| || ||||| || | || |||| || | ||||| || || || || |
Sbjct 42744 ACCTGAAGAACCGCGCCAGCAAG-GAGATTATCCGTGACATCATCACTGATGCCGTCAGA 42686
Query 230407 AACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGA 230465
| ||| |||||||| | ||| ||| | || || ||| ||| | ||||||||||| |
Sbjct 42685 ATCGAGCAGGAGTTCTTGACTGAGGCTCTCCCTTG-CGCTCTTCTGGGCATGAACGCCAA 42627
Query 230466 ACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGA 230525
|| ||| |||||||| || || || ||||| || | |||| || || || ||||
Sbjct 42626 CCTGATGAAGCAGTACATTGAGTTTGTTGCCGATCGTCTGCTTGTCGCTCTCGGAAACGA 42567
Query 230526 GAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAA 230585
||| | ||||| || |||||||||| ||||||||| |||||| || || ||
Sbjct 42566 GAAGATCTACAAGTCCTCCAACCCCTTTGACTTTATGGAGAACATTTCTCTGGGCGGCAA 42507
Query 230586 GACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGAA 230639
||||||||||||||| ||||||||| | || || |||| | ||||||| |||||
Sbjct 42506 GACCAACTTCTTCGAGAAGCGTGTCGGCGAGTACCAGAAGGCTGGTGTCATGAA 42453
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057804496700570
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |