Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq219 159 7e-34 >seq219 Length=54288 Score = 159 bits (176), Expect = 7e-34 Identities = 326/474 (69%), Gaps = 8/474 (2%) Strand=Plus/Minus Query 230170 TCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCG-GGAG 230228 || |||||| |||||||||| |||| | |||||| ||||| || | ||| | |||| Sbjct 42922 TCCTTTGCCCAGCGTCTCGTTGCCTTTGCTGCTGTTGAGGGTAT-CT-TCTTCAGCGGAG 42865 Query 230229 TTTCTGCG-CCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTA 230287 | ||| ||||||| ||||| ||| | |||| | |||||||| || | || | Sbjct 42864 CCTTTGCCTCCATCTTCTGGCTCAAGAAGAGAGGTCTCATGCCTGGTCTGACCTTCTCCA 42805 Query 230288 ACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAA 230347 ||||| ||||| ||| ||||||||||| || | || | || | | || Sbjct 42804 ACGAGCTCATCTCTCGTGACGAGGGTCTGCACACTGACTTTGCTTGCCTGCTCCACTCTC 42745 Query 230348 AGCTCCAGAACAA-GCTACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAA 230406 | || ||||| || | || |||| || | ||||| || || || || | Sbjct 42744 ACCTGAAGAACCGCGCCAGCAAG-GAGATTATCCGTGACATCATCACTGATGCCGTCAGA 42686 Query 230407 AACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGA 230465 | ||| |||||||| | ||| ||| | || || ||| ||| | ||||||||||| | Sbjct 42685 ATCGAGCAGGAGTTCTTGACTGAGGCTCTCCCTTG-CGCTCTTCTGGGCATGAACGCCAA 42627 Query 230466 ACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGA 230525 || ||| |||||||| || || || ||||| || | |||| || || || |||| Sbjct 42626 CCTGATGAAGCAGTACATTGAGTTTGTTGCCGATCGTCTGCTTGTCGCTCTCGGAAACGA 42567 Query 230526 GAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAA 230585 ||| | ||||| || |||||||||| ||||||||| |||||| || || || Sbjct 42566 GAAGATCTACAAGTCCTCCAACCCCTTTGACTTTATGGAGAACATTTCTCTGGGCGGCAA 42507 Query 230586 GACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGAA 230639 ||||||||||||||| ||||||||| | || || |||| | ||||||| ||||| Sbjct 42506 GACCAACTTCTTCGAGAAGCGTGTCGGCGAGTACCAGAAGGCTGGTGTCATGAA 42453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057804496700570