Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq219 114 1e-20 >seq219 Length=54288 Score = 114 bits (126), Expect = 1e-20 Identities = 359/551 (65%), Gaps = 19/551 (3%) Strand=Plus/Plus Query 16985 CCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTC 17044 |||||||| | ||| || ||||| || || |||| || ||||| |||| ||| Sbjct 42780 CCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGACCTCTCTTC 42839 Query 17045 TTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAAC 17104 || | ||| || || | ||| || | || ||||| |||||||| || | ||||| Sbjct 42840 TTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAGATACCCTCAACAGCAGCAAAG 42899 Query 17105 GCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCG 17164 || | | || | ||| | | | || |||| | ||||| || |||||||| Sbjct 42900 GCAACGAGACGCTGGGCAAAGGAAGAGTTCTTGTCCTGGATCCACTTGATGGCCCACTCG 42959 Query 17165 GCTTT-TTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAA----TAATTTCTCTTTTT 17219 || || |||| |||||| || || || || || || || || | | || Sbjct 42960 GCCTTCTTGCGA-ATGCAAGGGATAGTCTCAATAGCGTTGAAGAGGTAGGTGCGCTGG-- 43016 Query 17220 CCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCT 17279 |||| | || | | || || |||||||| || ||| | |||||||| ||||||| Sbjct 43017 -CTGT-GCTCCTTGACGTAGGTGTCGATGAGCAGAGAGTATGTCTCGGAGTGGATGTTCT 43074 Query 17280 CCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGA 17339 |||| ||||| || ||||| |||||||| || || | || ||||| || || || Sbjct 43075 CCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCGGGGATCTGAACCTCGCCGCTGA 43134 Query 17340 ATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATAT 17399 | || || | || || ||||| || |||||||| || || || || |||| || | Sbjct 43135 AACGCTCGACCAGGTTCTCGTTGACAATGCCGTCCGAGGCAGCAAAGAAGGCCAGGATGT 43194 Query 17400 GCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCG------CCAGTCCTTTAAATCTT 17453 | ||||| || || ||||| | || ||| |||||| | ||||| | Sbjct 43195 GAGAGATGAAGTACTTCTCGTCATCGTTCAG---GCGGTTGTTCCAGTCGTGCAAATCCT 43251 Query 17454 TGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCC 17513 |||| | ||| | || |||| |||||| || |||| | ||||| || ||||| | || Sbjct 43252 TGGACAGATCAATCTCCTCGGCGGTCCAGAAGGAAGCCTCAGCCTTCTTGTACATTTGCC 43311 Query 17514 AAATATCATTG 17524 | || | |||| Sbjct 43312 AGATCTAATTG 43322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517536290648520