Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06-
08] 1,439 sequences; 37,686,724 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq219 114 1e-20
>seq219
Length=54288
Score = 114 bits (126), Expect = 1e-20
Identities = 359/551 (65%), Gaps = 19/551 (3%)
Strand=Plus/Plus
Query 16985 CCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTC 17044
|||||||| | ||| || ||||| || || |||| || ||||| |||| |||
Sbjct 42780 CCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGACCTCTCTTC 42839
Query 17045 TTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAAC 17104
|| | ||| || || | ||| || | || ||||| |||||||| || | |||||
Sbjct 42840 TTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAGATACCCTCAACAGCAGCAAAG 42899
Query 17105 GCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCG 17164
|| | | || | ||| | | | || |||| | ||||| || ||||||||
Sbjct 42900 GCAACGAGACGCTGGGCAAAGGAAGAGTTCTTGTCCTGGATCCACTTGATGGCCCACTCG 42959
Query 17165 GCTTT-TTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAA----TAATTTCTCTTTTT 17219
|| || |||| |||||| || || || || || || || || | | ||
Sbjct 42960 GCCTTCTTGCGA-ATGCAAGGGATAGTCTCAATAGCGTTGAAGAGGTAGGTGCGCTGG-- 43016
Query 17220 CCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCT 17279
|||| | || | | || || |||||||| || ||| | |||||||| |||||||
Sbjct 43017 -CTGT-GCTCCTTGACGTAGGTGTCGATGAGCAGAGAGTATGTCTCGGAGTGGATGTTCT 43074
Query 17280 CCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGA 17339
|||| ||||| || ||||| |||||||| || || | || ||||| || || ||
Sbjct 43075 CCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCGGGGATCTGAACCTCGCCGCTGA 43134
Query 17340 ATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATAT 17399
| || || | || || ||||| || |||||||| || || || || |||| || |
Sbjct 43135 AACGCTCGACCAGGTTCTCGTTGACAATGCCGTCCGAGGCAGCAAAGAAGGCCAGGATGT 43194
Query 17400 GCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCG------CCAGTCCTTTAAATCTT 17453
| ||||| || || ||||| | || ||| |||||| | ||||| |
Sbjct 43195 GAGAGATGAAGTACTTCTCGTCATCGTTCAG---GCGGTTGTTCCAGTCGTGCAAATCCT 43251
Query 17454 TGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCC 17513
|||| | ||| | || |||| |||||| || |||| | ||||| || ||||| | ||
Sbjct 43252 TGGACAGATCAATCTCCTCGGCGGTCCAGAAGGAAGCCTCAGCCTTCTTGTACATTTGCC 43311
Query 17514 AAATATCATTG 17524
| || | ||||
Sbjct 43312 AGATCTAATTG 43322
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517536290648520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |