Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06-
08] 1,439 sequences; 37,686,724 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq219 109 6e-19
>seq219
Length=54288
Score = 109 bits (120), Expect = 6e-19
Identities = 183/264 (69%), Gaps = 3/264 (1%)
Strand=Plus/Plus
Query 16502 TCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATT 16561
|| ||||| |||||||| || ||||| || || ||||||||||||||||| | ||
Sbjct 43059 TCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCGGGGATC 43118
Query 16562 TGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCA 16621
|| || || || || || || |||||||||| || || || ||||| ||||||
Sbjct 43119 TGAACCTCGCCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCCGAGGCAGCA 43178
Query 16622 AAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAA---GAATATGCCAA 16678
|| || |||| ||||| ||||| || || |||||| | | | | | |||
Sbjct 43179 AAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAG 43238
Query 16679 TCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTT 16738
|| | ||||| ||||| | ||| | || || | ||||| ||| |||| | |||||
Sbjct 43239 TCGTGCAAATCCTTGGACAGATCAATCTCCTCGGCGGTCCAGAAGGAAGCCTCAGCCTTC 43298
Query 16739 TTATACATTTTCCAAATATCATTG 16762
|| ||||||| ||| || | ||||
Sbjct 43299 TTGTACATTTGCCAGATCTAATTG 43322
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511405200933480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |