Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq219 109 6e-19 >seq219 Length=54288 Score = 109 bits (120), Expect = 6e-19 Identities = 183/264 (69%), Gaps = 3/264 (1%) Strand=Plus/Plus Query 16502 TCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATT 16561 || ||||| |||||||| || ||||| || || ||||||||||||||||| | || Sbjct 43059 TCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCGGGGATC 43118 Query 16562 TGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCA 16621 || || || || || || || |||||||||| || || || ||||| |||||| Sbjct 43119 TGAACCTCGCCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCCGAGGCAGCA 43178 Query 16622 AAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAA---GAATATGCCAA 16678 || || |||| ||||| ||||| || || |||||| | | | | | ||| Sbjct 43179 AAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAG 43238 Query 16679 TCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTT 16738 || | ||||| ||||| | ||| | || || | ||||| ||| |||| | ||||| Sbjct 43239 TCGTGCAAATCCTTGGACAGATCAATCTCCTCGGCGGTCCAGAAGGAAGCCTCAGCCTTC 43298 Query 16739 TTATACATTTTCCAAATATCATTG 16762 || ||||||| ||| || | |||| Sbjct 43299 TTGTACATTTGCCAGATCTAATTG 43322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511405200933480