Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq56 196 6e-45 >seq56 Length=137465 Score = 196 bits (216), Expect = 6e-45 Identities = 285/398 (72%), Gaps = 6/398 (2%) Strand=Plus/Plus Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGG 145929 |||||||||||| | | |||||||||||||||||||||| | ||| ||| Sbjct 86606 ACGTAGAACTGGGCAAACATGTGGCAGGGCGGCAGGGCCATGCTCTTGAAGTCTTTTGGG 86665 Query 145930 TTCCAGGCGGTGAGGACGAGCCTCCTGCTC-TCGGGGTTCCTCTTGATCTCCCCTATCAG 145988 ||||| ||| |||||| | || | | || | |||||| | || || || | Sbjct 86666 TTCCATGCGCTGAGGATCATTCTGC-GATCATAGGGGTTGTTGCGGAGCTTGTGGATGAT 86724 Query 145989 GTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGTACGCGGC 146048 || |||||||| ||||||| || |||||||| ||| | ||| || || |||| Sbjct 86725 CTCGGCCAGCTGGTCGACGCCCTTGCCGGCGTAATCTGCCTTTGCGTCGACATAGTCGGC 86784 Query 146049 CCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGTGCCC 146108 || ||||||| ||||||||| ||||||||||| || ||||| ||| || | |||| Sbjct 86785 GCCAAAGTGCCGCCACTGGAAGCCGTAGACGGGGCCTAGGTCGCCGACGTCGCGGTGCGT 86844 Query 146109 CAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCC--C 146166 |||||| | | | | ||||| || |||||||||||| ||||||||||||||||||| | Sbjct 86845 GAGCCCGACGCTGTCAAGGAACTCGCGGGACCCGTTGCCGTCCCAGATCTTGACGCCGAC 86904 Query 146167 CTCGCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAGG 146226 |||| ||| | | ||||| ||| ||| |||||||||||||||||| ||| | Sbjct 86905 GTCGCTGAGGG--CGGTGGAGGAGGTGTTGCCCTCGATGAACCAGAGCAGCTCGGCGATG 86962 Query 146227 ACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGG 146264 || | | |||||| | ||||||||| || ||||| Sbjct 86963 ACGGCGCGGAGGAAGACTCGCTTGGTGGTGAGGAGGGG 87000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590066185993560