Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06-
08] 1,439 sequences; 37,686,724 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq219 302 5e-77
seq5 143 3e-29
seq38 123 3e-23
seq287 113 5e-20
>seq219
Length=54288
Score = 302 bits (334), Expect = 5e-77
Identities = 547/792 (69%), Gaps = 15/792 (2%)
Strand=Plus/Minus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| ||||| ||||| || |||||||||| ||||||| | || |||
Sbjct 43315 ATCTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACCGCCGAGGAGATTGATCTG 43256
Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752
|||||||| | ||||||| | ||| ||||||| ||||| | ||||||
Sbjct 43255 TCCAAGGATTTGCACGACTGGAACAACCGCCTGAACGATGACGAGAAGTACTTCATCTCT 43196
Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812
||| | |||||||| || || ||| |||||||| ||||||||||| ||||||||||||
Sbjct 43195 CACATCCTGGCCTTCTTTGCTGCCTCGGACGGCATTGTCAACGAGAACCTGGTCGAGCGT 43136
Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872
||| ||||| ||| | ||||||| || ||||||||||| || |||||| |||
Sbjct 43135 TTCAGCGGCGAGGTTCAGATCCCCGAGGCTCGATGCTTCTACGGTTTCCAGATCATGATG 43076
Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTTC 116928
|||||| | ||||| || | || || ||||||||||| ||||| | || |
Sbjct 43075 GAGAACATCCACTCCGAGACATACTCTCTGCTCATCGACACCTACGTCAAGGAGCAC--A 43018
Query 116929 GGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGC 116988
| | | | || | | || ||||| || ||||| || || ||| | |||||||
Sbjct 43017 GCCAGCGCACCTAC--CTCTTCAACGCTATTGAGACTATCCCTTGCATTCGCAAGAAGGC 42960
Query 116989 CGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGC 117048
||||||||| | |||||| | || | | |||| | | |||| || || ||
Sbjct 42959 CGAGTGGGCCATCAAGTGGATCCAGGACAAGAACTCTTCCTTTGCCCAGCGTCTCGTTGC 42900
Query 117049 CTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAA 117108
||| || || || ||||| ||||||| || || ||| |||| || ||||||||
Sbjct 42899 CTTTGCTGCTGTTGAGGGTATCTTCTTCAGCGGAGCCTTTGCCTCCATCTTCTGGCTCAA 42840
Query 117109 GAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGG 117168
||| | || |||||||| || ||||| ||| ||||||||||||||| | ||||||||
Sbjct 42839 GAAGAGAGGTCTCATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGG 42780
Query 117169 TCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGC 117228
|||||| |||||||| || |||| | || || | | || | ||| ||
Sbjct 42779 TCTGCACACTGACTTTGCTTGCCTGCTCCACTCTCACCTGAAGAACCGCGCCAGCAAGGA 42720
Query 117229 GCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGC 117288
| || | || ||| |||| || || ||| ||||||||| ||| | || || ||
Sbjct 42719 GATTATCCGTGACATCATCACTGATGCCGTCAGAATCGAGCAGGAGTTCTTGACTGAGGC 42660
Query 117289 GCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTC 117346
|| || |||| ||| ||||| | || || || | |||| ||| ||||| |||||
Sbjct 42659 TCT-CCCTTGCGCTCTTCTGGGCATGAA-CGCCAACCTGATGAAGCAGTACATTGAGTTT 42602
Query 117347 GTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCG 117406
|| ||||| | ||||| ||| || | || ||| |||||| | |||||||
Sbjct 42601 GTTGCCGATCGTCTGCTTGTCGCTCTCGGAAACGAGAAGATCTACAAGTCCTCCAACCCC 42542
Query 117407 CTGGACTTTATG 117418
| |||||||||
Sbjct 42541 TTTGACTTTATG 42530
>seq5
Length=314554
Score = 143 bits (158), Expect = 3e-29
Identities = 172/231 (74%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|| ||||| || ||||| || || |||||||| || || |||||| | || || || |
Sbjct 52552 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 52493
Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805
|||||| | | | |||| ||||| || || | ||||| |||||||| ||| ||||
Sbjct 52492 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGA 52434
Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865
|||||| ||| | |||| ||| || || ||||| || || | |||||||| | ||||||
Sbjct 52433 CCAGCAGCGATTGATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTA 52374
Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|||||||||||||||| | || || || || || ||||| || | || ||
Sbjct 52373 CAACATCCAGAAGGAGTCTACCCTCCACCTGGTCCTGCGCCTGCGTGGTGG 52323
>seq38
Length=159530
Score = 123 bits (136), Expect = 3e-23
Identities = 149/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || || ||||| ||||| ||||||||| |||| || || | ||
Sbjct 138495 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCTTCC 138554
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | | ||| || || | ||||| |||||||| || | ||||||
Sbjct 138555 GACACCATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAG 138614
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || | |||| ||| ||||| ||||| || || | || || || ||||||||||
Sbjct 138615 CAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGGACTCTGTCCGACTACAAC 138674
Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892
|||||||||||| |||| || ||
Sbjct 138675 ATCCAGAAGGAGTCCACCCTTCA 138697
Score = 114 bits (126), Expect = 1e-20
Identities = 145/197 (74%), Gaps = 2/197 (1%)
Strand=Plus/Plus
Query 40697 TATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCG 40756
|| |||| ||||| || || ||||| |||||||| | || ||||| | |||| | |
Sbjct 138787 TAGTCGTCAAAACCCTGACCGGCAAGACCATCACTCTTGAGGTCGAGTCATCCGATACCA 138846
Query 40757 TGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGA 40815
| | |||| ||||| || || | ||||| ||||| ||||| | |||||||| ||
Sbjct 138847 TCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAGCAGCGT 138905
Query 40816 CTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAG 40875
||||||| ||| || || ||||| || |||| || || || ||||||||||||||||
Sbjct 138906 CTCATCTTCGCTGGTAAGCAGCTTGAGGACGGCCGGACTCTGTCCGACTACAACATCCAG 138965
Query 40876 AAGGAGGCCACGCTGCA 40892
|||||| | || || ||
Sbjct 138966 AAGGAGTCTACTCTCCA 138982
Score = 100 bits (110), Expect = 3e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || | || ||||| || ||||| | || || || | |
Sbjct 139008 ATGCAGATCTTCGTCAAGACTTTAACCGGCAAGACAATCACACTGGAGGTGGAGTCATCT 139067
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | | | | |||| ||| || | ||||| ||||| || ||| | ||||||
Sbjct 139068 GATACCATCGACAATGTCAAATCAAAGATCCAGGACAAGGAGGGTATTCCCCCTGACCAG 139127
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || || |||| || || || |||||||| |||| || ||||| | ||||||||||
Sbjct 139128 CAGCGTCTTATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGTACCCTGAGCGACTACAAC 139187
Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892
|||||||||||| ||| || ||
Sbjct 139188 ATCCAGAAGGAGAGCACCCTTCA 139210
>seq287
Length=39990
Score = 113 bits (124), Expect = 5e-20
Identities = 143/196 (73%), Gaps = 2/196 (1%)
Strand=Plus/Minus
Query 40686 AAAAATGCAAATA--TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAA 40743
|| ||||| || | ||||| || || || |||||||| ||||||||| | || |||||
Sbjct 4670 AACAATGCGAAAAGTTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAG 4611
Query 40744 GCCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCG 40803
|| |||||| | | | ||||| || || | ||||| ||||| || ||| ||
Sbjct 4610 TCCTCCGACACGATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCG 4551
Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863
|| ||||| ||| | |||| ||| ||||| ||||| || || | || ||||| |||
Sbjct 4550 GATCAGCAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGAACCCTGTCTGAC 4491
Query 40864 TACAACATCCAGAAGG 40879
||||||||||||||||
Sbjct 4490 TACAACATCCAGAAGG 4475
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515209932494640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |