Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq595 84.2 3e-11 >seq595 Length=8865 Score = 84.2 bits (92), Expect = 3e-11 Identities = 231/336 (69%), Gaps = 40/336 (12%) Strand=Plus/Plus Query 9324 ttaatatatcctcataacaatataa-attaatattattcatt---ttttattattaatgt 9379 ||||||| | | |||| | | ||| |||||||||||| || ||||| ||||||| | Sbjct 7866 TTAATAT-TATTAATAATATTTTAATATTAATATTATTAATAATATTTTAATATTAATAT 7924 Query 9380 ---aaaatatgtaa----aatttcaaaaaatattg-tatttatatataatggttttaaaa 9431 ||||||| || || || ||||| |||| ||||| ||| || | |||||| Sbjct 7925 TTAAAAATATTTATTTATAAATTAAAAAATTATTAATATTTTATTATTATAATATTAAAA 7984 Query 9432 aattaaagtctataatattacatttaggattttt----aaatatatctatatttgatttt 9487 | ||||||| ||| | ||| |||| |||||| ||| | | ||||||| || | Sbjct 7985 ACTTAAAGTATATTTT-TTAAATTTTTTATTTTTTTTAAAAAAAAATTATATTT--TTAT 8041 Query 9488 tattttttcac--attaagtaat----tattttatttaatgatggtggtaattt-atat- 9539 ||||||| | ||| | ||| |||||| ||| || || | |||||| |||| Sbjct 8042 TATTTTTAAATTTATTTAAAAATATAATATTTTTTTTTATTATT-TAATAATTTTATATA 8100 Query 9540 ttattaataactttttttttATATTCAG---ATAGAGT-TAATATTTG--TAAGTTTATT 9593 || |||| | |||||||||||||| | ||| | |||||||| ||||||| | Sbjct 8101 TTTTTAAATATTTTTTTTTTATATTTATTAAATATTATATAATATTTAATTAAGTTTTTA 8160 Query 9594 AA--TGATTCTAAAAAATTAAATTTTTCTATTTTAT 9627 || | | ||||||||||| ||||| |||||| Sbjct 8161 AAATTAAAAATAAAAAATTAATTTTTT---TTTTAT 8193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755442411235200