Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06-
08] 1,439 sequences; 37,686,724 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq5 134 1e-26
seq38 125 6e-24
seq287 91.5 1e-13
>seq5
Length=314554
Score = 134 bits (148), Expect = 1e-26
Identities = 155/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||| ||||| |||||||| || || |||||||| ||||||| ||||| |||||||
Sbjct 52341 ACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 52400
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| || |||||| |||| | |||||||| || || || ||||||||||||||
Sbjct 52401 AGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 52460
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | |||| |||||| | ||| ||||| | ||| | ||| ||
Sbjct 52461 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 52520
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| || || || || || |||||||||||
Sbjct 52521 CCCGTGAGGGTCTTGACGAAAATCTGCAT 52549
>seq38
Length=159530
Score = 125 bits (138), Expect = 6e-24
Identities = 146/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||||||||| |||||||| || || |||||||| ||| || ||| || |||||
Sbjct 138988 ACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTCCGGCCGTCCTCA 138929
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| || |||||| |||||||||||||||| || ||||| || |||||||||||
Sbjct 138928 AGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGG 138869
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | |||| ||| || | ||||||||| | || | || |||
Sbjct 138868 ATCTTGGACTTGACGTTGTCGATGGTATCGGATGACTCGACCTCAAGAGTGATGGTCTTG 138809
Query 118710 CCGGTCAGAGTTTTTAC 118726
|||||||| ||||| ||
Sbjct 138808 CCGGTCAGGGTTTTGAC 138792
Score = 120 bits (132), Expect = 3e-22
Identities = 153/211 (73%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||||||| | || ||||| || || |||||||| ||| || ||| || ||| |||
Sbjct 138703 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTCCGGCCATCTTCG 138644
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| || || ||| |||| | |||||||| || ||||| ||||||||||||||
Sbjct 138643 AGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGG 138584
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | |||| |||||| | ||| ||||||| ||| | || |||
Sbjct 138583 ATCTTGGACTTCACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTG 138524
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740
||||| || || || || || || |||||||
Sbjct 138523 CCGGTGAGGGTCTTGACGAAGATTTGCATGG 138493
Score = 102 bits (112), Expect = 7e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||||||| | || ||| || || |||||||| ||||||| || || || ||
Sbjct 139216 ACCAAGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTACGACCGTCTTCC 139157
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| || ||||| |||| ||||||||||| || || || || |||||||||||
Sbjct 139156 AGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGG 139097
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| ||| ||| || | |||| ||| || | ||| ||||| | || | || |||
Sbjct 139096 ATCTTTGATTTGACATTGTCGATGGTATCAGATGACTCCACCTCCAGTGTGATTGTCTTG 139037
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||||| | ||| || || || ||||||||
Sbjct 139036 CCGGTTAAAGTCTTGACGAAGATCTGCAT 139008
>seq287
Length=39990
Score = 91.5 bits (100), Expect = 1e-13
Identities = 128/180 (71%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610
|| || |||||||| || || || || |||||||||||| || |||||| ||||
Sbjct 4477 TTCTGGATGTTGTAGTCAGACAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATC 4536
Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670
| ||||||||||| || || || ||||||||||| || || || || | |||
Sbjct 4537 AATCGCTGCTGATCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 4596
Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730
| ||||| | | ||||||||| | ||| | || ||||| ||||| || || || |||
Sbjct 4597 ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAA 4656
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433822791563788
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |