Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq38 116 4e-21 seq5 104 3e-17 >seq38 Length=159530 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| || | ||| |||||| || || ||||| || | ||||||||| | || || Sbjct 138703 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTCCGGCCATCTTCG 138644 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||| || ||||| || | ||||||||||| | || | || |||||||||| | Sbjct 138643 AGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGG 138584 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154 || || || | | | | |||||| || ||||| |||| |||||||| ||| Sbjct 138583 ATCTTGGACTTCACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTG 138524 Query 43155 CCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || ||||| || ||||||||||| Sbjct 138523 CCGGTGAGGGTCTTGACGAAGATTTGCAT 138495 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| || | ||||||||||| || || ||||| || ||| || || |||| || Sbjct 139216 ACCAAGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTACGACCGTCTTCC 139157 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||||||||| || || || ||||||||||| | || | | |||||||||| | Sbjct 139156 AGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGG 139097 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154 || ||| ||||| | | | || || || ||||| || | ||||| || ||| Sbjct 139096 ATCTTTGATTTGACATTGTCGATGGTATCAGATGACTCCACCTCCAGTGTGATTGTCTTG 139037 Query 43155 CCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || |||| ||||| || ||||| ||||| Sbjct 139036 CCGGTTAAAGTCTTGACGAAGATCTGCAT 139008 Score = 104 bits (114), Expect = 3e-17 Identities = 133/181 (73%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | ||||||||| |||| || ||||||||||||||||| Sbjct 138971 CTCCTTCTGGATGTTGTAGTCGGACAGAGTCCGGCCGTCCTCAAGCTGCTTACCAGCGAA 138912 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | || | | |||||||||| ||| || |||| ||| Sbjct 138911 GATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 138853 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | || ||| || || || || | |||||||| ||||| || || || || | Sbjct 138852 TGTCGATGGTATCGGATGACTCGACCTCAAGAGTGATGGTCTTGCCGGTCAGGGTTTTGA 138793 Query 43171 C 43171 | Sbjct 138792 C 138792 >seq5 Length=314554 Score = 104 bits (114), Expect = 3e-17 Identities = 142/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || ||| || || | || || ||||||||||||||||| Sbjct 52358 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCGAA 52417 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | |||||||||||| | || | || |||||||||| ||| || |||| ||| Sbjct 52418 GATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 52476 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| || ||||| || | ||||| || || ||||| || ||||| | Sbjct 52477 TGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGA 52536 Query 43171 CAAAGATTTGCATTTT 43186 | || || ||||| || Sbjct 52537 CGAAAATCTGCATCTT 52552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571807314430920