Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq38 118 7e-22 seq5 100 2e-16 seq287 93.3 3e-14 >seq38 Length=159530 Score = 118 bits (130), Expect = 7e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || |||| ||| | |||| || ||||| ||||||||||||||| Sbjct 139006 CCACCACGCAGACGAAGGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAC 138947 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | |||||| || ||||| ||||| ||||||||||| || Sbjct 138946 AGAGTCCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGAGGG 138887 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | | | | || | ||||| || ||||| Sbjct 138886 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTATCGGATGACTCGACC 138827 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 || | |||||||| |||||||| || ||||| || Sbjct 138826 TCAAGAGTGATGGTCTTGCCGGTCAGGGTTTTGAC 138792 Score = 116 bits (128), Expect = 2e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || |||| ||| | || || || ||||| |||||||||||| | Sbjct 139234 CCACCACGCAGACGGAGAACCAAGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 139175 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| |||| |||||| || || || || || ||||||||||| ||| Sbjct 139174 AGGGTACGACCGTCTTCCAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCAGGGGGA 139115 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| |||||| || | || | | || | ||| | || || || Sbjct 139114 ATACCCTCCTTGTCCTGGATCTTTGATTTGACATTGTCGATGGTATCAGATGACTCCACC 139055 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||||| || |||||||| | ||| || || ||||||||||| Sbjct 139054 TCCAGTGTGATTGTCTTGCCGGTTAAAGTCTTGACGAAGATCTGCAT 139008 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||||||||| ||| | || || | ||||||||| ||||| Sbjct 138685 TCCTTCTGGATGTTGTAGTCGGACAGAGTCCGGCCATCTTCGAGCTGCTTGCCGGCGAAG 138626 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || | ||||||||||| || | || ||||||||| ||||| ||| | || | Sbjct 138625 ATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTG 138566 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | |||| || || || || | |||||||| ||||||||||| || || || Sbjct 138565 TCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACG 138506 Query 34379 AAGATCTGCAT 34389 ||||| ||||| Sbjct 138505 AAGATTTGCAT 138495 >seq5 Length=314554 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||| |||||||| | ||| || ||||| |||||||||||| | Sbjct 52323 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTC 52382 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | |||||| || ||||| || | ||||||||||| ||| Sbjct 52383 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGA 52442 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | | || | |||| || || || Sbjct 52443 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 52502 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | ||||| || || || ||||| || || || || ||||||||| Sbjct 52503 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATC 52550 >seq287 Length=39990 Score = 93.3 bits (102), Expect = 3e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261 ||||| ||||||||||| ||||| ||| | || || | ||||||||| ||||| || Sbjct 4477 TTCTGGATGTTGTAGTCAGACAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATC 4536 Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT 34321 | |||||||| || ||| | | ||||||||| ||||| ||| | || | | Sbjct 4537 AATCGCTGCTGATCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 4596 Query 34322 ATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAA 34380 |||| |||| || ||||| || | |||||||| ||||| || || || ||||| || Sbjct 4597 ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 4655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323066334023840