Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq135 145 2e-29 >seq135 Length=88816 Score = 145 bits (160), Expect = 2e-29 Identities = 423/645 (66%), Gaps = 15/645 (2%) Strand=Plus/Minus Query 248782 CTGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACG 248841 || ||| ||| |||| ||| | | ||| || | ||| | | ||| | ||||| || Sbjct 30436 CTTGACTCCGCCATTGTCTATGACCGAGACTTCAACTACCAATACTTCGGCTTCAAGACC 30377 Query 248842 CTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATG 248901 |||||| ||| |||||||| || ||||||||||||| || || || ||||||||| Sbjct 30376 CTGGAGCGATCATATCTCCTGAAGCTTGATGGCAAGATTGTTGAGCGGCCACAGCACATG 30317 Query 248902 TTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTAC 248961 | |||||||||||||| || ||| || |||| ||| | || || ||||| ||| Sbjct 30316 ATTATGCGAGTGGCTGTTGGCATTTGGGGAGACAACATTGAGCGTGTCCTTGAGACATAC 30257 Query 248962 ACCGGAATG---AGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGT 249018 | ||| || || || | || ||||| | || || ||||||||||| ||| Sbjct 30256 CACCTCATGTCCAGCAAATTCT---TTACCCATGCGTCCCCCACCCTCTTCAACGCTGGT 30200 Query 249019 ACCGTCAACAA--TCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCG 249076 ||| | ||| |||||| ||| ||||| | ||| |||| | |||||| | | Sbjct 30199 ACC--CCGCAAGCTCAGCTCTCCTCATGCTTCTTGGTTGACATGAAGGACGACAGCATTG 30142 Query 249077 ACGGCATTTATGACACGCTTAAACAGACG-GCGAAGATTTCTAAATTCGCGGGCGGAATC 249135 | || || || || || || || | | | || | |||||| || | || || || ||| Sbjct 30141 AGGGTATCTACGATAC-TTTGAAGACATGTGCCATGATTTCCAAGATGGCTGGTGGTATC 30083 Query 249136 GGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTC 249195 || ||| |||| | ||||| || | || || || ||| || ||||| || | Sbjct 30082 GGCCTCAACGTCCACCGTATCCGTGCCACAGGCTCTTATATCGCCGGCACAAACGGTACC 30023 Query 249196 AGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAG 249255 | |||||| | ||| | ||||| ||| | ||| ||||| | | || ||||| Sbjct 30022 TCCAACGGTATCATCCCCATGCTTCGTGTCTTCAACAACACTGCCAGATACGTCGACCAG 29963 Query 249256 GCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATA 249312 | || | || || | || ||||| || | || |||||||||||| | Sbjct 29962 GGTGGAAACAAGCGTCCTGGTGCCTTTGCCATCTACCTCGAGCCTTGGCACGCCGATGTC 29903 Query 249313 TTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTC 249372 || |||||||| ||| | |||||| ||||||| || | | || |||||||| Sbjct 29902 TTTGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAAGAGGTCCGTGCCCGTGACCTG 29843 Query 249373 TTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAG 249417 ||| || || ||| || | || |||||||| |||||| || Sbjct 29842 TTCCTCGCTCTCTGGATCCCTGATCTGTTCATGAAGCGCGTCGAG 29798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073746602767552