Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq135 291 7e-74 seq219 181 9e-41 seq38 107 2e-18 seq5 102 7e-17 >seq135 Length=88816 Score = 291 bits (322), Expect = 7e-74 Identities = 636/949 (67%), Gaps = 4/949 (0%) Strand=Plus/Plus Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086 ||||| | ||||| || || ||||| || | | |||||| | ||| || || || Sbjct 29484 GAGGCCAAGTTGCAGACAGCGACCTCATCAGGCGCAGAGTACTCAATAATCTCAGTGCAG 29543 Query 23087 AGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCC 23146 || ||| | || || |||| || |||||||||| || || ||||| |||| Sbjct 29544 AGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGCTATCC 29603 Query 23147 TTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATA 23206 |||||||||||| | || | || ||||| ||| | ||| | ||| | ||||| Sbjct 29604 TTGTAGAGCATGAAGGGGTTACCAGTCTCAGTCTGGGCCTCCAGGATAGAGTACCACAGC 29663 Query 23207 GTCTGAGCGTGAACACGTCGCACGT--ACCTGCCTTCTTCCTCGTACTTTTGGTACAACG 23264 ||||||| | | | ||| || || | ||| |||| || ||||| | |||| | Sbjct 29664 TTCTGAGCTCGGATA-GTCTTGCGACCACGTCCCTCCTTC-TCATACTTCTCATACAGAG 29721 Query 23265 CGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGAC 23324 | || ||||| | || || ||||| || ||||| || ||| | || ||||| | | Sbjct 29722 CCTCGAATTCCTCGCCATAGCAGTCAGCAAGGCCAGGGCATTCATTAGGGCACATCAAAG 29781 Query 23325 TCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGA 23384 |||| ||| || || ||||| |||| || ||||| || ||||| |||||| || Sbjct 29782 TCCAATCCAAGTTCTTCTCGACGCGCTTCATGAACAGATCAGGGATCCAGAGAGCGAGGA 29841 Query 23385 ACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCA 23444 |||| || ||||| || ||||| || |||||| |||||| | || | || || | Sbjct 29842 ACAGGTCACGGGCACGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGGTCAAGGAACTCAA 29901 Query 23445 ACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGC 23504 | || || || ||||| ||||||||||| | |||||| || || || | ||| || || | Sbjct 29902 AGACATCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGTTTCCAC 29961 Query 23505 CCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGG 23564 |||| |||||||| | ||| ||||||||| | || | ||||| || | || |||||||| Sbjct 29962 CCTGGTCGACGTATCTGGCAGTGTTGTTGAAGACACGAAGCATGGGGATGATACCGTTGG 30021 Query 23565 ACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAAC 23624 | | ||| | ||| || | | || ||| | || || | ||| |||| || | Sbjct 30022 AGGTACCGTTTGTGCCGGCGATATAAGAGCCTGTGGCACGGATACGGTGGACGTTGAGGC 30081 Query 23625 CTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCT 23684 | || || || || || || ||||| || ||| |||| ||| |||||||| |||| Sbjct 30082 CGATACCACCAGCCATCTTGGAAATCATGGCACATGTCTTCAAAGTATCGTAGATACCCT 30141 Query 23685 CGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAG 23744 | |||||||| || || | | |||||||| || || || | || |||| || ||| Sbjct 30142 CAATGCTGTCGTCCTTCATGTCAACCAAGAAGCATGAGGAGAGCTGAGCTTGCGGGGTAC 30201 Query 23745 CGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACG 23804 | || ||| || || ||| || || |||||| || | ||||| || | ||| | Sbjct 30202 CAGCGTTGAAGAGGGTGGGGGACGCATGGGTAAAGAATTTGCTGGACATGAGGTGGTATG 30261 Query 23805 TGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGT 23864 | || | | | ||||||| ||||| || || | || || ||||| ||||||| Sbjct 30262 TCTCAAGGACACGCTCAATGTTGTCTCCCCAAATGCCAACAGCCACTCGCATAATCATGT 30321 Query 23865 ATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTT 23924 || || | ||| || | ||| | || || | |||||||| || | || || | Sbjct 30322 GCTGTGGCCGCTCAACAATCTTGCCATCAAGCTTCAGGAGATATGATCGCTCCAGGGTCT 30381 Query 23925 TAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 | || || || || | ||||| ||||| || || | || ||||| || Sbjct 30382 TGAAGCCGAAGTATTGGTAGTTGAAGTCTCGGTCATAGACAATGGCGGA 30430 >seq219 Length=54288 Score = 181 bits (200), Expect = 9e-41 Identities = 554/839 (66%), Gaps = 27/839 (3%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| ||||| || || || || ||||||| ||| || | || ||| Sbjct 43315 ATCTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACCGCCGAGGAGATTGATCTG 43256 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCCTC---AAAGAATCTGA-GAGAAAT--TTTATT 57683 || |||||| || ||| ||| | || | || || ||| ||||| | || || Sbjct 43255 TCCAAGGATTTGCACGACTGGAACAACCGCCTGAACGA---TGACGAGAAGTACTTCATC 43199 Query 57684 AAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAA 57743 ||| | |||| || || || || || || || ||||| |||||||| ||||||| Sbjct 43198 TCTCACATCCTGGCCTTCTTTGCTGCCTCGGACGGCATTGTCAACGAGAACCTGGTCGAG 43139 Query 57744 AGATTTTCACAAG--AAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGG 57801 | ||||| | | || || | | ||||| ||||||| ||||| || || | Sbjct 43138 CG--TTTCAGCGGCGAGGTTCAGATCCCCGAGGCTCGATGCTTCTACGGTTTCCAGATCA 43081 Query 57802 CCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACA 57861 || || ||| | || || || | || || || |||||||| || ||||| ||||| Sbjct 43080 TGATGGAGAACATCCACTCCGAGACATACTCTCTGCTCATCGACACCTACGTCAAGGAGC 43021 Query 57862 ACGACGAGAA-ACGTAGACTGTTCAACGCGATCGAAACAATGCCC-GCGATCGCCAAGAA 57919 || | || || || || |||||||| || || || || || || |||| ||||| Sbjct 43020 ACAGCCAGCGCACCTAC-CTCTTCAACGCTATTGAGACTATCCCTTGCATTCGC-AAGAA 42963 Query 57920 GGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAAT 57979 ||| |||||| | ||||| ||||| | | | | | || ||| || | || | Sbjct 42962 GGCCGAGTGGGCCATCAAGTGGATCCAGGACAAGAACTCTTCCTTTGCCCAGCGTCTCGT 42903 Query 57980 CGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGAT 58039 || || || || || || ||||| ||||| || |||||| | || || ||| | Sbjct 42902 TGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGCGGAGCCTTTGCCTCCATCTTCTGGCT 42843 Query 58040 GAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGA 58099 ||||| | || || ||||| || ||||| || ||||||| | || || || ||||| Sbjct 42842 CAAGAAGAGAGGTCTCATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGACGA 42783 Query 58100 GGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAAC-CGAC-G 58157 |||||| || ||||| ||||| ||||| | |||||||| | || || | || | | Sbjct 42782 GGGTCTGCACACTGACTTTGCTTGCCTGCTCCACTCTCAC---CTGAAGAACCGCGCCAG 42726 Query 58158 C-GGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCAC 58216 | ||| ||| ||||| ||||| || || ||| ||||| | ||||| | || Sbjct 42725 CAAGGAGATTATCCGTGACATCATCACTGATGCCGTCAGAATCGAGCAGGAGTTCTTGAC 42666 Query 58217 CGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGA 58276 || || || || || | || || |||||| | ||||| |||||||||| Sbjct 42665 TGAGGCTCTCCCTTGCGCTCTTCTGGGCATGAACGCCAACCTGATGAAGCAGTACATTGA 42606 Query 58277 GTTTGTTGCCGACAGACTTTTGCTCGAACT--GATTGGAGAGCGTCATTACAACACGAAA 58334 |||||||||||| | || | ||| || || |||| || ||||| | Sbjct 42605 GTTTGTTGCCGATCGTCTGCTTGTCGCTCTCGGAAACGAGAAGATC--TACAAGTCCTCC 42548 Query 58335 AATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGAAAA 58393 || || ||||| |||||| | || || || | |||||||| ||||| ||||| || Sbjct 42547 AACCCCTTTGACTTTATGGAGAACATTTCTCTGGGCGGCAAGACCAACTTCTTCGAGAA 42489 >seq38 Length=159530 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 ||| ||||||||| ||||| ||||| || || ||||| || |||||| |||| || || Sbjct 138490 CAACCATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGT 138549 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | ||||||| |||| | || || | || ||||||||| ||| | || || | Sbjct 138550 CTTCCGACACCATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCTG 138609 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||||||||| | || ||||| ||||| ||| | ||||| |||| || ||| | Sbjct 138610 ACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGGACTCTGTCCGACT 138669 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 | ||||| || || || || || ||||| |||| || Sbjct 138670 ACAACATCCAGAAGGAGTCCACCCTTCACTTGGTTCT 138706 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||| | || ||||| || ||||| | || || || | || Sbjct 139008 ATGCAGATCTTCGTCAAGACTTTAACCGGCAAGACAATCACACTGGAGGTGGAGTCATCT 139067 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | |||| | |||||| || ||| | ||||||||| || | || || ||||| Sbjct 139068 GATACCATCGACAATGTCAAATCAAAGA-TCCAGGACAAGGAGGGTATTCCCCCTGACCA 139126 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || || ||||| || ||| |||||||| | || ||||||| || || Sbjct 139127 GCAGCGTCTTATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGTACCCTGAGCGACTACAA 139186 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || || ||||| |||| || Sbjct 139187 CATCCAGAAGGAGAGCACCCTTCACTTGGTTCT 139219 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 31203 TCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCG 31262 |||| || || ||||| ||||| || ||||| | || || || | ||||| | ||| Sbjct 138790 TCGTCAAAACCCTGACCGGCAAGACCATCACTCTTGAGGTCGAGTCATCCGATACCATCG 138849 Query 31263 AAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAA 31322 | | ||||| | || ||||||||| || | || || |||||||||||||| | Sbjct 138850 ACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAGCAGCGTCTCA 138909 Query 31323 TATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAG 31382 | |||||||| || ||| | || ||| |||| || ||| || ||||| || || | Sbjct 138910 TCTTCGCTGGTAAGCAGCTTGAGGACGGCCGGACTCTGTCCGACTACAACATCCAGAAGG 138969 Query 31383 AATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 | || ||||| || |||| ||| | ||| | || |||| Sbjct 138970 AGTCTACTCTCCACTTGGTCCTTCGTCTGCGTGGTGGTA 139008 >seq5 Length=314554 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| || || || || ||||||||| | || || || | Sbjct 52552 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 52493 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| |||| | ||||| | || ||||||||| ||| | || || ||| Sbjct 52492 TCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGAC 52433 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||||| | || |||||||| || ||| | || || || ||||||| || Sbjct 52432 CAGCAGCGATTGATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTAC 52373 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||| || || || || || || || ||||| || | ||| | || ||| Sbjct 52372 AACATCCAGAAGGAGTCTACCCTCCACCTGGTCCTGCGCCTGCGTGGTGGT 52322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445758381776880