Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq219 161 2e-34 seq135 140 6e-28 >seq219 Length=54288 Score = 161 bits (178), Expect = 2e-34 Identities = 340/503 (68%), Gaps = 12/503 (2%) Strand=Plus/Minus Query 101858 AAGAAGGAGCAGTGGGCTATTAATTGGATGCAAAGCAATAACGATT---TGGCGGAACTA 101914 ||||||| ||||||| || || ||||| || ||| ||| || | || | | Sbjct 42967 AAGAAGGCCGAGTGGGCCATCAAGTGGATCCAGGACAAGAACTCTTCCTTTGCCCAGCGT 42908 Query 101915 ATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTC 101974 | |||||||||||||| ||||| || |||||||| || || || || || ||||| ||| Sbjct 42907 CTCGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGCGGAGCCTTTGCCTCCATCTTC 42848 Query 101975 TGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGG 102034 ||| ||||||| || ||| | |||||||||| |||| |||||| ||| |||| ||| | Sbjct 42847 TGGCTCAAGAAGAGAGGTCTCATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCTCGT 42788 Query 102035 GACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACC 102094 ||||| ||||| || |||||||| ||| |||| | || || ||| Sbjct 42787 GACGAGGGTCTGCACACTGACTTTGCTTGCCTGCT----CCACTCTCACCTGAAGA-ACC 42733 Query 102095 ---CCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAA 102151 ||| |||| || | || | ||| || ||||||| |||||| |||| || || || Sbjct 42732 GCGCCAGCAAG-GAGATTATCCGTGACATCATCACTGATGCCGTCAGAATCGAGCAGGAG 42674 Query 102152 TTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAG 102211 || | || | | || ||| | |||| |||||| ||| |||||| ||| Sbjct 42673 TTCTTGACTGAGGCTCTCCCTTGCGCTCTTCTGGGCATGAACGCCAACCTGATGAAGCAG 42614 Query 102212 TACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAAT 102271 |||||||| ||||| || ||| || | || | | ||| || ||| ||| || Sbjct 42613 TACATTGAGTTTGTTGCCGATCGTCTGCTTGTCGCTCTCGGAAACGAGAAGATCTACAAG 42554 Query 102272 GTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTT 102331 |||||||||| || ||||| || ||||| || | ||||||||||| || Sbjct 42553 TCCTCCAACCCCTTTGACTTTATGGAGAACATTTCTCTGGGCGGCAAGACCAACTTCTTC 42494 Query 102332 GAAAAGAGAGTCGCCGAGTATCA 102354 || ||| | |||| |||||| || Sbjct 42493 GAGAAGCGTGTCGGCGAGTACCA 42471 >seq135 Length=88816 Score = 140 bits (154), Expect = 6e-28 Identities = 420/644 (65%), Gaps = 16/644 (2%) Strand=Plus/Plus Query 94407 CTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTCGGAAAGGCCAGGGCA 94466 |||||| ||||| |||| |||| || || ||||||| | ||| | |||||||||||| Sbjct 29702 CTCATACTTCTCATACAGAGCCTCGAATTCCTCGCCATAGCAGTCAGCAAGGCCAGGGCA 29761 Query 94467 CTCGTGGGGGCACATCAGGGACCAATTCTTCCCAGC-CTTC---ACTCTCTCCATGAAGA 94522 || | |||||||||| | ||||| || || |||| || | || |||||| | Sbjct 29762 TTCATTAGGGCACATCAAAGTCCAAT----CCAAGTTCTTCTCGACGCGCTTCATGAACA 29817 Query 94523 GATCAGATACCCAGATAGCTGGGAAAAGATCCCTCGTCCTCAAATCTTCATTACCGGCAT 94582 |||||| | ||||| ||| |||| || || | | | | ||||| || ||| | Sbjct 29818 GATCAGGGATCCAGAGAGCGAGGAACAGGTCACGGGCACGGACCTCTTCCTTGCCGTGGT 29877 Query 94583 TCTTTCTGCAGTCAATAAAGTCCTTCACGTCCAGATGCCAATCAGAAATATAGATGGCTG 94642 |||| | | ||||| || || || || |||||| | |||||||| Sbjct 29878 TCTTGCGGAGGTCAAGGAACTCAAAGACATCGGCGTGCCAAGGCTCGAGGTAGATGGCAA 29937 Query 94643 CAGCTCCTCTCCTCTTGTCTCCTCCCTGGCTAACCTTTTTCACAGAGACGTTAAAGATTT 94702 || || | ||||| ||| |||||| || | | | ||| | ||| |||| Sbjct 29938 AGGCACCAGGACGCTTGTTTCCACCCTGGTCGACGTATCTGGCAGTGTTGTTGAAGACAC 29997 Query 94703 GGAGGAACGCCATGAGACCAGGGTGGGTACCACT----CCATGACGAAATGGGGCTTCCT 94758 | || | | |||| ||| | |||||| | || | ||| || | ||| Sbjct 29998 GAAGCATGGGGATGATACCGTTGGAGGTACCGTTTGTGCC--GGCGATATAAGAG--CCT 30053 Query 94759 TTTGCCCTCAAATCATGAAAGTGGATGCCGAGTCCTCCAGCAGTCTTGGAGATGATTGCC 94818 | || | | | || | || || ||||| || ||||| ||||||| || || || Sbjct 30054 GTGGCACGGATACGGTGGACGTTGAGGCCGATACCACCAGCCATCTTGGAAATCATGGCA 30113 Query 94819 GCCTCCTTAAGAGTATCATAAATACCCTCAATGCTATCATCTTGAAGGCCCAGAAGGAAG 94878 ||| | |||||| || |||||||||||||| || || | | | | | | |||| Sbjct 30114 CATGTCTTCAAAGTATCGTAGATACCCTCAATGCTGTCGTCCTTCATGTCAACCAAGAAG 30173 Query 94879 CACGAGGAAAGTTGGGGTGTGACTGTTCCACAATTAAACAGTGTGGGGGAAGCATGGGTA 94938 || ||||| || || | | || ||| || || || |||||||| ||||||||| Sbjct 30174 CATGAGGAGAGCTGAGCTTGCGGGGTACCAGCGTTGAAGAGGGTGGGGGACGCATGGGTA 30233 Query 94939 AAATAGTGCCTCGACATGAGATCATATGTTTCAATGACAGATTTGATGTCTGATCCGTGA 94998 || | | || |||||||| | ||||| |||| |||| | |||| ||| | Sbjct 30234 AAGAATTTGCTGGACATGAGGTGGTATGTCTCAAGGACACGCTCAATGTTGTCTCCCCAA 30293 Query 94999 ATGCCGACAGCCACACGCATAATCATGTCCTGAGGGCGCTCAAC 95042 ||||| |||||||| ||||||||||||| ||| || |||||||| Sbjct 30294 ATGCCAACAGCCACTCGCATAATCATGTGCTGTGGCCGCTCAAC 30337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989565754854245