Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06-
08] 1,439 sequences; 37,686,724 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq219 161 2e-34
seq135 140 6e-28
>seq219
Length=54288
Score = 161 bits (178), Expect = 2e-34
Identities = 340/503 (68%), Gaps = 12/503 (2%)
Strand=Plus/Minus
Query 101858 AAGAAGGAGCAGTGGGCTATTAATTGGATGCAAAGCAATAACGATT---TGGCGGAACTA 101914
||||||| ||||||| || || ||||| || ||| ||| || | || | |
Sbjct 42967 AAGAAGGCCGAGTGGGCCATCAAGTGGATCCAGGACAAGAACTCTTCCTTTGCCCAGCGT 42908
Query 101915 ATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTC 101974
| |||||||||||||| ||||| || |||||||| || || || || || ||||| |||
Sbjct 42907 CTCGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGCGGAGCCTTTGCCTCCATCTTC 42848
Query 101975 TGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGG 102034
||| ||||||| || ||| | |||||||||| |||| |||||| ||| |||| ||| |
Sbjct 42847 TGGCTCAAGAAGAGAGGTCTCATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCTCGT 42788
Query 102035 GACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACC 102094
||||| ||||| || |||||||| ||| |||| | || || |||
Sbjct 42787 GACGAGGGTCTGCACACTGACTTTGCTTGCCTGCT----CCACTCTCACCTGAAGA-ACC 42733
Query 102095 ---CCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAA 102151
||| |||| || | || | ||| || ||||||| |||||| |||| || || ||
Sbjct 42732 GCGCCAGCAAG-GAGATTATCCGTGACATCATCACTGATGCCGTCAGAATCGAGCAGGAG 42674
Query 102152 TTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAG 102211
|| | || | | || ||| | |||| |||||| ||| |||||| |||
Sbjct 42673 TTCTTGACTGAGGCTCTCCCTTGCGCTCTTCTGGGCATGAACGCCAACCTGATGAAGCAG 42614
Query 102212 TACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAAT 102271
|||||||| ||||| || ||| || | || | | ||| || ||| ||| ||
Sbjct 42613 TACATTGAGTTTGTTGCCGATCGTCTGCTTGTCGCTCTCGGAAACGAGAAGATCTACAAG 42554
Query 102272 GTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTT 102331
|||||||||| || ||||| || ||||| || | ||||||||||| ||
Sbjct 42553 TCCTCCAACCCCTTTGACTTTATGGAGAACATTTCTCTGGGCGGCAAGACCAACTTCTTC 42494
Query 102332 GAAAAGAGAGTCGCCGAGTATCA 102354
|| ||| | |||| |||||| ||
Sbjct 42493 GAGAAGCGTGTCGGCGAGTACCA 42471
>seq135
Length=88816
Score = 140 bits (154), Expect = 6e-28
Identities = 420/644 (65%), Gaps = 16/644 (2%)
Strand=Plus/Plus
Query 94407 CTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTCGGAAAGGCCAGGGCA 94466
|||||| ||||| |||| |||| || || ||||||| | ||| | ||||||||||||
Sbjct 29702 CTCATACTTCTCATACAGAGCCTCGAATTCCTCGCCATAGCAGTCAGCAAGGCCAGGGCA 29761
Query 94467 CTCGTGGGGGCACATCAGGGACCAATTCTTCCCAGC-CTTC---ACTCTCTCCATGAAGA 94522
|| | |||||||||| | ||||| || || |||| || | || |||||| |
Sbjct 29762 TTCATTAGGGCACATCAAAGTCCAAT----CCAAGTTCTTCTCGACGCGCTTCATGAACA 29817
Query 94523 GATCAGATACCCAGATAGCTGGGAAAAGATCCCTCGTCCTCAAATCTTCATTACCGGCAT 94582
|||||| | ||||| ||| |||| || || | | | | ||||| || ||| |
Sbjct 29818 GATCAGGGATCCAGAGAGCGAGGAACAGGTCACGGGCACGGACCTCTTCCTTGCCGTGGT 29877
Query 94583 TCTTTCTGCAGTCAATAAAGTCCTTCACGTCCAGATGCCAATCAGAAATATAGATGGCTG 94642
|||| | | ||||| || || || || |||||| | ||||||||
Sbjct 29878 TCTTGCGGAGGTCAAGGAACTCAAAGACATCGGCGTGCCAAGGCTCGAGGTAGATGGCAA 29937
Query 94643 CAGCTCCTCTCCTCTTGTCTCCTCCCTGGCTAACCTTTTTCACAGAGACGTTAAAGATTT 94702
|| || | ||||| ||| |||||| || | | | ||| | ||| ||||
Sbjct 29938 AGGCACCAGGACGCTTGTTTCCACCCTGGTCGACGTATCTGGCAGTGTTGTTGAAGACAC 29997
Query 94703 GGAGGAACGCCATGAGACCAGGGTGGGTACCACT----CCATGACGAAATGGGGCTTCCT 94758
| || | | |||| ||| | |||||| | || | ||| || | |||
Sbjct 29998 GAAGCATGGGGATGATACCGTTGGAGGTACCGTTTGTGCC--GGCGATATAAGAG--CCT 30053
Query 94759 TTTGCCCTCAAATCATGAAAGTGGATGCCGAGTCCTCCAGCAGTCTTGGAGATGATTGCC 94818
| || | | | || | || || ||||| || ||||| ||||||| || || ||
Sbjct 30054 GTGGCACGGATACGGTGGACGTTGAGGCCGATACCACCAGCCATCTTGGAAATCATGGCA 30113
Query 94819 GCCTCCTTAAGAGTATCATAAATACCCTCAATGCTATCATCTTGAAGGCCCAGAAGGAAG 94878
||| | |||||| || |||||||||||||| || || | | | | | | ||||
Sbjct 30114 CATGTCTTCAAAGTATCGTAGATACCCTCAATGCTGTCGTCCTTCATGTCAACCAAGAAG 30173
Query 94879 CACGAGGAAAGTTGGGGTGTGACTGTTCCACAATTAAACAGTGTGGGGGAAGCATGGGTA 94938
|| ||||| || || | | || ||| || || || |||||||| |||||||||
Sbjct 30174 CATGAGGAGAGCTGAGCTTGCGGGGTACCAGCGTTGAAGAGGGTGGGGGACGCATGGGTA 30233
Query 94939 AAATAGTGCCTCGACATGAGATCATATGTTTCAATGACAGATTTGATGTCTGATCCGTGA 94998
|| | | || |||||||| | ||||| |||| |||| | |||| ||| |
Sbjct 30234 AAGAATTTGCTGGACATGAGGTGGTATGTCTCAAGGACACGCTCAATGTTGTCTCCCCAA 30293
Query 94999 ATGCCGACAGCCACACGCATAATCATGTCCTGAGGGCGCTCAAC 95042
||||| |||||||| ||||||||||||| ||| || ||||||||
Sbjct 30294 ATGCCAACAGCCACTCGCATAATCATGTGCTGTGGCCGCTCAAC 30337
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989565754854245
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |