Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06-
08] 1,439 sequences; 37,686,724 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq219 132 6e-26
>seq219
Length=54288
Score = 132 bits (146), Expect = 6e-26
Identities = 358/544 (66%), Gaps = 8/544 (1%)
Strand=Plus/Plus
Query 36172 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 36231
||| ||||||||||| | | || | |||||||| || || || || ||||| || ||
Sbjct 42773 GTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGACC 42832
Query 36232 ACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGC 36291
| ||| || ||||| || ||||| ||||| | ||| ||||| || || || || ||
Sbjct 42833 TCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAGATACCCTCAACAGC 42892
Query 36292 CGCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCACTGTCATGTATCCACTTTTGAGC 36348
|||||||||| || | || || || | |||| || |||||||| ||
Sbjct 42893 AGCAAAGGCAACGAGACGCTGGGCAAAGGAAGAGTTCTTGTCCTGGATCCACTTGATGGC 42952
Query 36349 CCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttttt 36408
||| ||||||||||| | ||||| || ||||| ||||| || ||||| ||| |
Sbjct 42953 CCACTCGGCCTTCTTGCGAATGCAAGGGATAGTCTCAATAGCGTTGAAGAGGTAGGTGCG 43012
Query 36409 ttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTT 36468
| | || || || || || || || | ||| || | || || || |||||
Sbjct 43013 CTGGCTGTGCTCCTTGACGTAGGTGTCGATGAGCAGAGAGTATGTCTCGGAGTGGATGTT 43072
Query 36469 TTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACA 36528
|| || || || || |||||||| |||| |||||||| ||||| || || |
Sbjct 43073 CTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCGGGGATCTGAACCTCGCCGCT 43132
Query 36529 AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 36588
|| || || | | || || || || || ||||| ||| ||||| || |||| |
Sbjct 43133 GAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCCGAGGCAGCAAAGAAGGCCAGGAT 43192
Query 36589 ATGTTTTATAAAATATTTTTCGT-TTGGTGTTA---GTTTATTCCAATCATTGATATCTT 36644
|| || || || || |||| | || | | | || ||||| || | | ||| |
Sbjct 43193 GTGAGAGATGAAGTACTTCTCGTCATCGT-TCAGGCGGTTGTTCCAGTCGTGCAAATCCT 43251
Query 36645 TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 36704
| || | ||| | || || | ||||| || || ||||| ||||| || ||||| | ||
Sbjct 43252 TGGACAGATCAATCTCCTCGGCGGTCCAGAAGGAAGCCTCAGCCTTCTTGTACATTTGCC 43311
Query 36705 AGAT 36708
||||
Sbjct 43312 AGAT 43315
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658160961116760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |