Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq219 132 6e-26 >seq219 Length=54288 Score = 132 bits (146), Expect = 6e-26 Identities = 358/544 (66%), Gaps = 8/544 (1%) Strand=Plus/Plus Query 36172 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 36231 ||| ||||||||||| | | || | |||||||| || || || || ||||| || || Sbjct 42773 GTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGACC 42832 Query 36232 ACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGC 36291 | ||| || ||||| || ||||| ||||| | ||| ||||| || || || || || Sbjct 42833 TCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAGATACCCTCAACAGC 42892 Query 36292 CGCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCACTGTCATGTATCCACTTTTGAGC 36348 |||||||||| || | || || || | |||| || |||||||| || Sbjct 42893 AGCAAAGGCAACGAGACGCTGGGCAAAGGAAGAGTTCTTGTCCTGGATCCACTTGATGGC 42952 Query 36349 CCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttttt 36408 ||| ||||||||||| | ||||| || ||||| ||||| || ||||| ||| | Sbjct 42953 CCACTCGGCCTTCTTGCGAATGCAAGGGATAGTCTCAATAGCGTTGAAGAGGTAGGTGCG 43012 Query 36409 ttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTT 36468 | | || || || || || || || | ||| || | || || || ||||| Sbjct 43013 CTGGCTGTGCTCCTTGACGTAGGTGTCGATGAGCAGAGAGTATGTCTCGGAGTGGATGTT 43072 Query 36469 TTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACA 36528 || || || || || |||||||| |||| |||||||| ||||| || || | Sbjct 43073 CTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCGGGGATCTGAACCTCGCCGCT 43132 Query 36529 AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 36588 || || || | | || || || || || ||||| ||| ||||| || |||| | Sbjct 43133 GAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCCGAGGCAGCAAAGAAGGCCAGGAT 43192 Query 36589 ATGTTTTATAAAATATTTTTCGT-TTGGTGTTA---GTTTATTCCAATCATTGATATCTT 36644 || || || || || |||| | || | | | || ||||| || | | ||| | Sbjct 43193 GTGAGAGATGAAGTACTTCTCGTCATCGT-TCAGGCGGTTGTTCCAGTCGTGCAAATCCT 43251 Query 36645 TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 36704 | || | ||| | || || | ||||| || || ||||| ||||| || ||||| | || Sbjct 43252 TGGACAGATCAATCTCCTCGGCGGTCCAGAAGGAAGCCTCAGCCTTCTTGTACATTTGCC 43311 Query 36705 AGAT 36708 |||| Sbjct 43312 AGAT 43315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658160961116760