Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq56 89.7 4e-13 >seq56 Length=137465 Score = 89.7 bits (98), Expect = 4e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 20944 TGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGT 21003 |||| || || ||||| |||| | ||| |||| ||| ||| || | |||| Sbjct 86382 TGTAGACATGTGCGTCGCCCATGACGTGGGTAAAGGTTCCTGGGACAAGATCGCAAACGT 86441 Query 21004 GAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCA 21063 |||||| || || ||||| | ||||||||||| ||||| ||||||| || || |||| Sbjct 86442 GAGCGAGCATATGTGTCAGCAATGCGTAGCTGGCAATGTTGAACGGGATGCCCAGACCCA 86501 Query 21064 TGTCGGCGGACCTCTGGTACAGCTGGCAG 21092 ||||| ||| | |||||| ||||||||| Sbjct 86502 TGTCGCAGGATCGCTGGTATAGCTGGCAG 86530 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 21236 CAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAA 21295 ||||||||| || |||| || |||| | || | || | || || || ||||| Sbjct 86731 CAGCTGGTCGACGCCCTTGCCGGCGTAATCTGCCTTTGCGTCGACATAGTCGGCGCCAAA 86790 Query 21296 ATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGCGGTCCCCGAAGCC 21355 || | ||||||||| ||||| || || || || ||||| || ||||| | || ||| Sbjct 86791 GTGCCGCCACTGGAAGCCGTAGACGGGGCCTAGGTCGCCGACGTCGCGGTGCGTGA-GCC 86849 Query 21356 CTGCGCCGCCAAA-AAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACGCCG-CGGCGC 21413 | ||| | ||| || |||||||||||| ||||||| || || |||||| || ||| Sbjct 86850 CGACGCTGTCAAGGAACTCGCGGGACCCGTTGCCGTCCCAGATCTTGACGCCGACGTCGC 86909 Query 21414 GACAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTC 21460 || |||||||| |||| |||| ||| ||||| |||| ||| Sbjct 86910 -TGAGGGCGGTGGAGGAGGTGTTGCCCTCGATGAACCAGAGCAGCTC 86955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427768497744720