Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06-
08] 1,439 sequences; 37,686,724 total letters
Query= NC_003401.1
Length=133719
Score E
Sequences producing significant alignments: (Bits) Value
seq56 89.7 4e-13
>seq56
Length=137465
Score = 89.7 bits (98), Expect = 4e-13
Identities = 109/149 (73%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 20944 TGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGT 21003
|||| || || ||||| |||| | ||| |||| ||| ||| || | ||||
Sbjct 86382 TGTAGACATGTGCGTCGCCCATGACGTGGGTAAAGGTTCCTGGGACAAGATCGCAAACGT 86441
Query 21004 GAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCA 21063
|||||| || || ||||| | ||||||||||| ||||| ||||||| || || ||||
Sbjct 86442 GAGCGAGCATATGTGTCAGCAATGCGTAGCTGGCAATGTTGAACGGGATGCCCAGACCCA 86501
Query 21064 TGTCGGCGGACCTCTGGTACAGCTGGCAG 21092
||||| ||| | |||||| |||||||||
Sbjct 86502 TGTCGCAGGATCGCTGGTATAGCTGGCAG 86530
Score = 89.7 bits (98), Expect = 4e-13
Identities = 159/227 (70%), Gaps = 4/227 (2%)
Strand=Plus/Plus
Query 21236 CAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAA 21295
||||||||| || |||| || |||| | || | || | || || || |||||
Sbjct 86731 CAGCTGGTCGACGCCCTTGCCGGCGTAATCTGCCTTTGCGTCGACATAGTCGGCGCCAAA 86790
Query 21296 ATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGCGGTCCCCGAAGCC 21355
|| | ||||||||| ||||| || || || || ||||| || ||||| | || |||
Sbjct 86791 GTGCCGCCACTGGAAGCCGTAGACGGGGCCTAGGTCGCCGACGTCGCGGTGCGTGA-GCC 86849
Query 21356 CTGCGCCGCCAAA-AAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACGCCG-CGGCGC 21413
| ||| | ||| || |||||||||||| ||||||| || || |||||| || |||
Sbjct 86850 CGACGCTGTCAAGGAACTCGCGGGACCCGTTGCCGTCCCAGATCTTGACGCCGACGTCGC 86909
Query 21414 GACAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTC 21460
|| |||||||| |||| |||| ||| ||||| |||| |||
Sbjct 86910 -TGAGGGCGGTGGAGGAGGTGTTGCCCTCGATGAACCAGAGCAGCTC 86955
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427768497744720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |