Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq219 95.1 9e-15 >seq219 Length=54288 Score = 95.1 bits (104), Expect = 9e-15 Identities = 275/423 (65%), Gaps = 8/423 (2%) Strand=Plus/Minus Query 22741 CGTCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATA 22800 |||||| | |||||||| |||||||| || || | || || | ||||| |||| Sbjct 42910 CGTCTCGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGCGGAGCCTTTGCCTCCATC 42851 Query 22801 TTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGC 22860 |||||||| ||||| | |||||||| || || | || ||||||||| | || Sbjct 42850 TTCTGGCTCAAGAAGAGAGGTCTCATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCT 42791 Query 22861 CGTGACGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAA 22920 |||||||| ||||| ||| |||||||||||| |||| || || | || Sbjct 42790 CGTGACGAGGGTCTGCACACTGACTTTGCTTGCCTGCTCCACTCTCACCTG----AAGAA 42735 Query 22921 CCGTGTCAGGACGATGCACATC----AAATCATATCTGATGCCGTTGACATTGAGACGGC 22976 ||| | ||| | | | ||| | ||||| |||||||||| || ||| || Sbjct 42734 CCGCGCCAGCAAGGAGATTATCCGTGACATCATCACTGATGCCGTCAGAATCGAGCAGGA 42675 Query 22977 TTTCTTCCAAGAGGCACTAAAGACACCCCTACTTGGTATGAATAGTGACAGTATGAGACT 23036 ||||| ||||| || | || || || ||||| || |||| | Sbjct 42674 GTTCTTGACTGAGGCTCTCCCTTGCGCTCTTCTGGGCATGAACGCCAACCTGATGAAGCA 42615 Query 23037 GTACATACAGTTTGTTGCAGATCGCCTGCTCGATGCCCTGGGTTATGCAAAGATGTATAA 23096 |||||| |||||||||| ||||| ||||| | || || || | | ||||| || || Sbjct 42614 GTACATTGAGTTTGTTGCCGATCGTCTGCTTGTCGCTCTCGGAAACGAGAAGATCTACAA 42555 Query 23097 CGTTGCCAATCCATTTGATTTCATGGATAACATTAGCATTGAAGGTAAAACAAACTTCTT 23156 |||| || ||||| || ||||| |||||| | | || || || |||||||| Sbjct 42554 GTCCTCCAACCCCTTTGACTTTATGGAGAACATTTCTCTGGGCGGCAAGACCAACTTCTT 42495 Query 23157 TGA 23159 || Sbjct 42494 CGA 42492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356227352441917