Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06-
08] 1,439 sequences; 37,686,724 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq38 114 1e-20
seq5 104 2e-17
seq219 86.0 6e-12
>seq38
Length=159530
Score = 114 bits (126), Expect = 1e-20
Identities = 164/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594
||||| || || | ||| | ||| ||||||| || ||| || || ||||| || |||
Sbjct 139237 TGGCCACCACGCAGACGGAGAACCAAGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCG 139178
Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654
|||| || | |||||| ||||| ||||||||| |||| ||||| ||||| || ||
Sbjct 139177 CTCAGGGTACGACCGTCTTCCAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCAGGG 139118
Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714
|| || || || ||||| ||| ||| ||| | | || | || || | | ||||
Sbjct 139117 GGAATACCCTCCTTGTCCTGGATCTTTGATTTGACATTGTCGATGGTATCAGATGACTCC 139058
Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
||||| | || | ||||||||||| || || || ||||| || ||||||
Sbjct 139057 ACCTCCAGTGTGATTGTCTTGCCGGTTAAAGTCTTGACGAAGATCTGCATA 139007
Score = 100 bits (110), Expect = 3e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614
||| ||||||| || ||||| || || ||||| || ||| || || | |||||
Sbjct 138704 AACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTCCGGCCATCTTC 138645
Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674
|||||| || || || |||||| || ||||| || ||||| ||||| || |||||
Sbjct 138644 GAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTG 138585
Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734
||| || || | | || | ||||||| | ||||||||| | ||| | |||||
Sbjct 138584 GATCTTGGACTTCACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTT 138525
Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|||||| | || || ||||| ||||||||
Sbjct 138524 GCCGGTGAGGGTCTTGACGAAGATTTGCAT 138495
Score = 91.5 bits (100), Expect = 1e-13
Identities = 152/220 (69%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||| | || ||||| | |||||||| || || ||||| || ||| |
Sbjct 139006 CCACCACGCAGACGAAGGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAC 138947
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| || | ||| || ||||| |||||||| |||| ||||| ||||| || |||||
Sbjct 138946 AGAGTCCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGAGGG 138887
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
|| || || ||||| ||| || || | | || | || |||| | ||| |||
Sbjct 138886 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTATCGGATGACTCGACC 138827
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATA 139757
|||| || | ||||||||||||| ||||| |||| ||
Sbjct 138826 TCAAGAGTGATGGTCTTGCCGGTCAGGGTTTTGACGACTA 138787
>seq5
Length=314554
Score = 104 bits (114), Expect = 2e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609
|||| || | ||| | |||||||| || || ||||| || ||||||| ||||
Sbjct 52335 CGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCA 52394
Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669
|| |||||||| |||||||| |||||| || ||||| || || || ||||| || |||
Sbjct 52395 TCCTCGAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTG 52454
Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729
|| ||| || || | | || | ||||||| | ||||||||||| ||| | |
Sbjct 52455 TCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATC 52514
Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||||| || || | || || ||||| || |||||
Sbjct 52515 GTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 52549
>seq219
Length=54288
Score = 86.0 bits (94), Expect = 6e-12
Identities = 343/533 (64%), Gaps = 9/533 (2%)
Strand=Plus/Minus
Query 52532 TCAACGCTTTTGACAATGTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGA 52591
|||||||| |||| | | | || || | ||||| |||| || ||||| | || ||||
Sbjct 42999 TCAACGCTATTGAGACTATCCCTTGCATTCGCAAGAAGGCCGAGTGGGCCATCAAGTGGA 42940
Query 52592 TCGAAAACGACAAAGCCACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTG 52651
|| | || | || | | |||||| | ||||| || || |||||| || || |||
Sbjct 42939 TCCAGGACAAGAACTCTTCCTTTGCCCAGCGTCTCGTTGCCTTTGCTGCTGTTGAGGGTA 42880
Query 52652 TGtttttttCGGGTAGTTTTGCGGCAATATTTTACATCAAAACCTTGGGCATAATGCCCG 52711
| || || || ||||| | || || | |||| | || | ||||| |
Sbjct 42879 TCTTCTTCAGCGGAGCCTTTGCCTCCATCTTCTGGCTCAAGAAGAGAGGTCTCATGCCTG 42820
Query 52712 GCCTCACGTTTAGCAACGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGT 52771
| || || || ||||||| | || || || ||||| || ||||||| || ||||| |
Sbjct 42819 GTCTGACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGTCTGCACACTGACTTTGCTT 42760
Query 52772 GTTTGTATTATAATACGCGCGTTAAAGAAAAATTGTCAT--ATGAAAAAATTCTAGACAT 52829
| || | | | | | | | || || | || | || | || | |||||
Sbjct 42759 GCCTGC--TCCACT-CTCACCTGAAG--AACCGCGCCAGCAAGGAGATTATCCGTGACAT 42705
Query 52830 GTTTAAAGAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATT 52889
| | || |||||| || || | ||||| || || || ||| | || | |
Sbjct 42704 CATCACTGATGCCGTCAGAATCGAGCAGGAGTTCTTGACTGAGGCTCTCCCTTGCGCTCT 42645
Query 52890 GTTGGGCATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTG-T 52948
||||||||||||| | | ||||| ||||||| ||||||||||| || | ||| |
Sbjct 42644 TCTGGGCATGAACGCCAACCTGATGAAGCAGTACATTGAGTTTGTTGCCGATCGTCTGCT 42585
Query 52949 TGATGCAGCTCGGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACA 53008
|| || ||||| | ||| ||| || | ||||||||| |||||| | |
Sbjct 42584 TGTCGC-TCTCGGAAACGAGAAGATCTACAAGTCCTCCAACCCCTTTGACTTTATGGAGA 42526
Query 53009 ACATATCGCTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTAC 53061
|||| || || | ||||| || ||||| ||||||| ||||| |||||||||
Sbjct 42525 ACATTTCTCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGCGAGTAC 42473
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496055077048800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |