Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq38 114 1e-20 seq5 104 2e-17 seq219 86.0 6e-12 >seq38 Length=159530 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 ||||| || || | ||| | ||| ||||||| || ||| || || ||||| || ||| Sbjct 139237 TGGCCACCACGCAGACGGAGAACCAAGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCG 139178 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 |||| || | |||||| ||||| ||||||||| |||| ||||| ||||| || || Sbjct 139177 CTCAGGGTACGACCGTCTTCCAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCAGGG 139118 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 || || || || ||||| ||| ||| ||| | | || | || || | | |||| Sbjct 139117 GGAATACCCTCCTTGTCCTGGATCTTTGATTTGACATTGTCGATGGTATCAGATGACTCC 139058 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| | || | ||||||||||| || || || ||||| || |||||| Sbjct 139057 ACCTCCAGTGTGATTGTCTTGCCGGTTAAAGTCTTGACGAAGATCTGCATA 139007 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| ||||||| || ||||| || || ||||| || ||| || || | ||||| Sbjct 138704 AACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTCCGGCCATCTTC 138645 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 |||||| || || || |||||| || ||||| || ||||| ||||| || ||||| Sbjct 138644 GAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTG 138585 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 ||| || || | | || | ||||||| | ||||||||| | ||| | ||||| Sbjct 138584 GATCTTGGACTTCACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTT 138525 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||| | || || ||||| |||||||| Sbjct 138524 GCCGGTGAGGGTCTTGACGAAGATTTGCAT 138495 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||| | |||||||| || || ||||| || ||| | Sbjct 139006 CCACCACGCAGACGAAGGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAC 138947 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||| || ||||| |||||||| |||| ||||| ||||| || ||||| Sbjct 138946 AGAGTCCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGAGGG 138887 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || ||||| ||| || || | | || | || |||| | ||| ||| Sbjct 138886 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTATCGGATGACTCGACC 138827 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATA 139757 |||| || | ||||||||||||| ||||| |||| || Sbjct 138826 TCAAGAGTGATGGTCTTGCCGGTCAGGGTTTTGACGACTA 138787 >seq5 Length=314554 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || | ||| | |||||||| || || ||||| || ||||||| |||| Sbjct 52335 CGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCA 52394 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || |||||||| |||||||| |||||| || ||||| || || || ||||| || ||| Sbjct 52395 TCCTCGAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTG 52454 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | ||||||| | ||||||||||| ||| | | Sbjct 52455 TCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATC 52514 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || || | || || ||||| || ||||| Sbjct 52515 GTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 52549 >seq219 Length=54288 Score = 86.0 bits (94), Expect = 6e-12 Identities = 343/533 (64%), Gaps = 9/533 (2%) Strand=Plus/Minus Query 52532 TCAACGCTTTTGACAATGTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGA 52591 |||||||| |||| | | | || || | ||||| |||| || ||||| | || |||| Sbjct 42999 TCAACGCTATTGAGACTATCCCTTGCATTCGCAAGAAGGCCGAGTGGGCCATCAAGTGGA 42940 Query 52592 TCGAAAACGACAAAGCCACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTG 52651 || | || | || | | |||||| | ||||| || || |||||| || || ||| Sbjct 42939 TCCAGGACAAGAACTCTTCCTTTGCCCAGCGTCTCGTTGCCTTTGCTGCTGTTGAGGGTA 42880 Query 52652 TGtttttttCGGGTAGTTTTGCGGCAATATTTTACATCAAAACCTTGGGCATAATGCCCG 52711 | || || || ||||| | || || | |||| | || | ||||| | Sbjct 42879 TCTTCTTCAGCGGAGCCTTTGCCTCCATCTTCTGGCTCAAGAAGAGAGGTCTCATGCCTG 42820 Query 52712 GCCTCACGTTTAGCAACGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGT 52771 | || || || ||||||| | || || || ||||| || ||||||| || ||||| | Sbjct 42819 GTCTGACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGTCTGCACACTGACTTTGCTT 42760 Query 52772 GTTTGTATTATAATACGCGCGTTAAAGAAAAATTGTCAT--ATGAAAAAATTCTAGACAT 52829 | || | | | | | | | || || | || | || | || | ||||| Sbjct 42759 GCCTGC--TCCACT-CTCACCTGAAG--AACCGCGCCAGCAAGGAGATTATCCGTGACAT 42705 Query 52830 GTTTAAAGAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATT 52889 | | || |||||| || || | ||||| || || || ||| | || | | Sbjct 42704 CATCACTGATGCCGTCAGAATCGAGCAGGAGTTCTTGACTGAGGCTCTCCCTTGCGCTCT 42645 Query 52890 GTTGGGCATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTG-T 52948 ||||||||||||| | | ||||| ||||||| ||||||||||| || | ||| | Sbjct 42644 TCTGGGCATGAACGCCAACCTGATGAAGCAGTACATTGAGTTTGTTGCCGATCGTCTGCT 42585 Query 52949 TGATGCAGCTCGGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACA 53008 || || ||||| | ||| ||| || | ||||||||| |||||| | | Sbjct 42584 TGTCGC-TCTCGGAAACGAGAAGATCTACAAGTCCTCCAACCCCTTTGACTTTATGGAGA 42526 Query 53009 ACATATCGCTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTAC 53061 |||| || || | ||||| || ||||| ||||||| ||||| ||||||||| Sbjct 42525 ACATTTCTCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGCGAGTAC 42473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496055077048800