Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06-
08] 1,439 sequences; 37,686,724 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq219 138 2e-27
>seq219
Length=54288
Score = 138 bits (152), Expect = 2e-27
Identities = 358/543 (66%), Gaps = 6/543 (1%)
Strand=Plus/Plus
Query 49974 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 50033
||||||||||||||| | | || || |||||||| || || || || ||||| || ||
Sbjct 42773 GTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGACC 42832
Query 50034 ACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGC 50093
| ||| || ||||| || ||||| ||||| | || |||||||| || || || ||
Sbjct 42833 TCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAGATACCCTCAACAGC 42892
Query 50094 GGCAAAGGCAACAAGTCTCTCTCCA---TAACTGGCGCTGTCATGTATCCACTTTTGAGC 50150
||||||||||| || | || || || | |||| || |||||||| ||
Sbjct 42893 AGCAAAGGCAACGAGACGCTGGGCAAAGGAAGAGTTCTTGTCCTGGATCCACTTGATGGC 42952
Query 50151 CCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttt 50210
||| ||||||||||| | ||||| || || || || || || ||||| ||| |
Sbjct 42953 CCACTCGGCCTTCTTGCGAATGCAAGGGATAGTCTCAATAGCGTTGAAGAGGTAGGTGCG 43012
Query 50211 ttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTT 50270
| | || || || || || ||||| | ||| || | || || || |||||
Sbjct 43013 CTGGCTGTGCTCCTTGACGTAGGTGTCGATGAGCAGAGAGTATGTCTCGGAGTGGATGTT 43072
Query 50271 TTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACA 50330
|| || ||||| || |||||||| |||| |||||||| ||||| || || |
Sbjct 43073 CTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCGGGGATCTGAACCTCGCCGCT 43132
Query 50331 AAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 50390
|| || || | | || || || || || ||||| ||| ||||| || |||| |
Sbjct 43133 GAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCCGAGGCAGCAAAGAAGGCCAGGAT 43192
Query 50391 ATGTTTTATAAAATGTTTTTCGT--TGGGT-GTTAGTTTATTCCAATCATTGATATCTTT 50447
|| || || | || |||| | | | | || ||||| || | | ||| ||
Sbjct 43193 GTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAGTCGTGCAAATCCTT 43252
Query 50448 AGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCA 50507
|| | ||| | || || | ||||| || || ||||| ||||| || ||||| | |||
Sbjct 43253 GGACAGATCAATCTCCTCGGCGGTCCAGAAGGAAGCCTCAGCCTTCTTGTACATTTGCCA 43312
Query 50508 GAT 50510
|||
Sbjct 43313 GAT 43315
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718255880139960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |