Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq219 123 3e-23 >seq219 Length=54288 Score = 123 bits (136), Expect = 3e-23 Identities = 355/544 (65%), Gaps = 8/544 (1%) Strand=Plus/Plus Query 42079 GTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 42138 |||||||||||| || | | || | |||||||| || || || || ||||| || || Sbjct 42773 GTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGACC 42832 Query 42139 ACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGC 42198 | ||| || ||||| || || || ||||| | ||| |||||||| || || || || Sbjct 42833 TCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAGATACCCTCAACAGC 42892 Query 42199 CGCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCACTGTCATGTATCCACTTTTGAGC 42255 |||||||||| || | || || || | |||| || |||||||| || Sbjct 42893 AGCAAAGGCAACGAGACGCTGGGCAAAGGAAGAGTTCTTGTCCTGGATCCACTTGATGGC 42952 Query 42256 CCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttt 42315 ||| ||||||||||| | ||||| || || || || || || ||||| ||| | Sbjct 42953 CCACTCGGCCTTCTTGCGAATGCAAGGGATAGTCTCAATAGCGTTGAAGAGGTAGGTGCG 43012 Query 42316 ttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTT 42375 | | || || || || || ||||| | ||| || | || || || ||||| Sbjct 43013 CTGGCTGTGCTCCTTGACGTAGGTGTCGATGAGCAGAGAGTATGTCTCGGAGTGGATGTT 43072 Query 42376 TTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACA 42435 || || ||||| || |||||||| |||| ||||||| | ||| || || | Sbjct 43073 CTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCGGGGATCTGAACCTCGCCGCT 43132 Query 42436 AAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 42495 || || || | | || ||||| || || ||||| ||| ||||| || |||| | Sbjct 43133 GAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCCGAGGCAGCAAAGAAGGCCAGGAT 43192 Query 42496 ATGTTTTATAAAATATTTTTCGTCCGGTGTTAA----TTTATTCCAATCATTGATATCTT 42551 || || || || || |||| | ||| | || ||||| || | | ||| | Sbjct 43193 GTGAGAGATGAAGTACTTCTCGT-CATCGTTCAGGCGGTTGTTCCAGTCGTGCAAATCCT 43251 Query 42552 TAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCC 42611 | || | ||| | || || | ||||| || || || || ||||| || ||||| | || Sbjct 43252 TGGACAGATCAATCTCCTCGGCGGTCCAGAAGGAAGCCTCAGCCTTCTTGTACATTTGCC 43311 Query 42612 AGAT 42615 |||| Sbjct 43312 AGAT 43315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671127127883640