Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06-
08] 1,439 sequences; 37,686,724 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq219 123 3e-23
>seq219
Length=54288
Score = 123 bits (136), Expect = 3e-23
Identities = 355/544 (65%), Gaps = 8/544 (1%)
Strand=Plus/Plus
Query 42079 GTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 42138
|||||||||||| || | | || | |||||||| || || || || ||||| || ||
Sbjct 42773 GTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGACC 42832
Query 42139 ACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGC 42198
| ||| || ||||| || || || ||||| | ||| |||||||| || || || ||
Sbjct 42833 TCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAGATACCCTCAACAGC 42892
Query 42199 CGCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCACTGTCATGTATCCACTTTTGAGC 42255
|||||||||| || | || || || | |||| || |||||||| ||
Sbjct 42893 AGCAAAGGCAACGAGACGCTGGGCAAAGGAAGAGTTCTTGTCCTGGATCCACTTGATGGC 42952
Query 42256 CCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttt 42315
||| ||||||||||| | ||||| || || || || || || ||||| ||| |
Sbjct 42953 CCACTCGGCCTTCTTGCGAATGCAAGGGATAGTCTCAATAGCGTTGAAGAGGTAGGTGCG 43012
Query 42316 ttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTT 42375
| | || || || || || ||||| | ||| || | || || || |||||
Sbjct 43013 CTGGCTGTGCTCCTTGACGTAGGTGTCGATGAGCAGAGAGTATGTCTCGGAGTGGATGTT 43072
Query 42376 TTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACA 42435
|| || ||||| || |||||||| |||| ||||||| | ||| || || |
Sbjct 43073 CTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCGGGGATCTGAACCTCGCCGCT 43132
Query 42436 AAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 42495
|| || || | | || ||||| || || ||||| ||| ||||| || |||| |
Sbjct 43133 GAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCCGAGGCAGCAAAGAAGGCCAGGAT 43192
Query 42496 ATGTTTTATAAAATATTTTTCGTCCGGTGTTAA----TTTATTCCAATCATTGATATCTT 42551
|| || || || || |||| | ||| | || ||||| || | | ||| |
Sbjct 43193 GTGAGAGATGAAGTACTTCTCGT-CATCGTTCAGGCGGTTGTTCCAGTCGTGCAAATCCT 43251
Query 42552 TAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCC 42611
| || | ||| | || || | ||||| || || || || ||||| || ||||| | ||
Sbjct 43252 TGGACAGATCAATCTCCTCGGCGGTCCAGAAGGAAGCCTCAGCCTTCTTGTACATTTGCC 43311
Query 42612 AGAT 42615
||||
Sbjct 43312 AGAT 43315
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671127127883640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |