Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq219 107 2e-18 seq38 87.8 2e-12 >seq219 Length=54288 Score = 107 bits (118), Expect = 2e-18 Identities = 353/535 (66%), Gaps = 13/535 (2%) Strand=Plus/Minus Query 50327 TCAACGCTTTCGATAATATTTCGTGTGTGCGTAAAAAGGACGATTGGGCATTGAAATGGA 50386 |||||||| | || | ||| | || | || || |||| ||| ||||| | || |||| Sbjct 42999 TCAACGCTATTGAGACTATCCCTTGCATTCGCAAGAAGGCCGAGTGGGCCATCAAGTGGA 42940 Query 50387 CTaaaaacaaaaaa-CTTACTTTGGCCGAACGTTTAGTGGCGTTTGCCATAGTTGAAGGT 50445 | |||| || ||| ||||| || | ||| | || || ||||| ||||| ||| Sbjct 42939 TCCAGGACAAGAACTCTTCCTTTGCCC-AGCGTCTCGTTGCCTTTGCTGCTGTTGAGGGT 42881 Query 50446 GTGtttttttCCGGTAGCTTTGCAGCCATATTTTACATTAAAACCTTAGGCATAATGCCC 50505 | || || ||| |||||| |||| || | | || | ||| | ||||| Sbjct 42880 ATCTTCTTCAGCGGAGCCTTTGCCTCCATCTTCTGGCTCAAGAAGAGAGGTCTCATGCCT 42821 Query 50506 GGCCTCACGTTTAGCAACGAGTTGATTTCGCGCGACGAAGGAATGCACACAGACTTTGCG 50565 || || || || ||||||| | || || || ||||| || ||||||| |||||||| Sbjct 42820 GGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGTCTGCACACTGACTTTGCT 42761 Query 50566 TGTTTGTACTACAATACGCGCGTAAATGAAAAATT--ATCATACGAAACAATTTTGGACA 50623 || || || || | | | | | || ||| | || | || | || |||| Sbjct 42760 TGCCTG--CTCCACT-CTCACCTGAA-GAACCGCGCCAGCA-AGGAGATTATCCGTGACA 42706 Query 50624 TGTTCAAAGAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTG-GCA 50682 | ||| || |||||| ||||| | ||||| || || || ||| | ||| || || Sbjct 42705 TCATCACTGATGCCGTCAGAATCGAGCAGGAGTTCTTGACTGAGGCTCT-CCCTTGCGCT 42647 Query 50683 TTGTTGGGCATGAACGCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGACAGATTG 50742 | ||||||||||||| || ||||| ||||||||||||||||||| || | || Sbjct 42646 CTTCTGGGCATGAACGCCAACCTGATGAAGCAGTACATTGAGTTTGTTGCCGATCGTCTG 42587 Query 50743 -TTGTTGCAGCTGGGACAACCGAAATACTATAATGCACGTAACCCCTTTCCGTTTATGAA 50801 |||| || || ||| | ||| ||| || | ||||||||| |||||| | Sbjct 42586 CTTGTCGC-TCTCGGAAACGAGAAGATCTACAAGTCCTCCAACCCCTTTGACTTTATGGA 42528 Query 50802 TAACATATCGTTGGAGGGCAAAACAAACTTTTTCGAAAGACGTGTAGGCGAATAC 50856 ||||| || ||| ||||| || ||||| ||||| | ||||| ||||| ||| Sbjct 42527 GAACATTTCTCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGCGAGTAC 42473 >seq38 Length=159530 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 142955 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 143014 ||||| || || | ||| | ||| || |||| || || || || |||||||| ||| Sbjct 139237 TGGCCACCACGCAGACGGAGAACCAAGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCG 139178 Query 143015 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 143074 |||| || | |||||| || || ||||||||| |||| ||||| ||||| || || Sbjct 139177 CTCAGGGTACGACCGTCTTCCAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCAGGG 139118 Query 143075 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCT 143134 || || || || ||||| || ||| ||| | | || | || || | | || Sbjct 139117 GGAATACCCTCCTTGTCCTGGATCTTTGATTTGACATTGTCGATGGTATCAGATGACTCC 139058 Query 143135 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || || | || | ||||||||||| || || || ||||| || |||||| Sbjct 139057 ACCTCCAGTGTGATTGTCTTGCCGGTTAAAGTCTTGACGAAGATCTGCATA 139007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507005280078480