Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06-
08] 1,439 sequences; 37,686,724 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq219 241 2e-58
seq135 136 6e-27
>seq219
Length=54288
Score = 241 bits (266), Expect = 2e-58
Identities = 578/863 (67%), Gaps = 31/863 (4%)
Strand=Plus/Minus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|| ||| |||||||||| |||||| |||| ||||| ||||| | ||| ||| | ||||||
Sbjct 43315 ATCTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACCGCCGAGGAGATTGATCTG 43256
Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAG----AGTTTAT 125134
|||||||| || |||| ||| | | || ||| || ||| |||| | || ||
Sbjct 43255 TCCAAGGATTTGCACGACTGGAACAACCGCCTGAACGA---TGA-CGAGAAGTACTTCAT 43200
Query 125135 ATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGAC 125194
|| ||||| ||||||||||||| | ||| || || || |||||||| || ||| |
Sbjct 43199 CTCTCACATCCTGGCCTTCTTTGCTGCCTCGGACGGCATTGTCAACGAGAACCTGGTCGA 43140
Query 125195 ACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCA 125253
|| ||| ||| | || || |||| ||| ||||| ||||| ||||| ||||
Sbjct 43139 GCGTTTCAGCGGCGAGGTTCAGATCCCCGAGG-CTCGATGCTTCTACGGTTTCCAGATCA 43081
Query 125254 TGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATC 125313
|||| |||||| | ||||| || | |||||| || || |||| ||| || |
Sbjct 43080 TGATGGAGAACATCCACTCCGAGACATACTCTCTGCTCATCGACACCTAC-GTCAAGGAG 43022
Query 125314 CGCAACGTAAACACAT-GCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAG 125372
| || | ||| | ||||| ||||| || || || | || | || || || |||
Sbjct 43021 CACAGCCAGCGCACCTACCTCTTCAACGCTATTGAGACTATCCCTTGCATTCGCAAGAAG 42962
Query 125373 GCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTG 125432
|| | |||| || ||||||| | ||| | || ||||| | ||| | | || ||
Sbjct 42961 GCCGAGTGGGCCATCAAGTGGATCCAGGACAAGAACTCTTCCTTTGCCCAGCGTCTCGTT 42902
Query 125433 GCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTC 125492
|| || || || || ||||| |||||||| || ||||| ||||||| ||||||
Sbjct 42901 GCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGCGGAGCCTTTGCCTCCATCTTCTGGCTC 42842
Query 125493 AAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAG 125552
|||||| | || |||||||| || ||||| | |||||| | || ||||| ||||||
Sbjct 42841 AAGAAGAGAGGTCTCATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGACGAG 42782
Query 125553 GGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCG-AGTGCAG 125611
|| || ||| ||||||||| | ||| | | ||| || || | || | |
Sbjct 42781 GGTCTGCACACTGACTTTGC---TTGCCTG---CTCCACTCTC----ACCTGAAGAACCG 42732
Query 125612 ATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTT 125671
||||| | || | || |||| | || |||||||| || || || || |||||
Sbjct 42731 CGCCAGCAAGGAGATTATCCGTGACATCATCACTGATGCCGTCAGAATCGAGCAGGAGTT 42672
Query 125672 TCTAACCGA----ATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCG 125727
| || || ||||| || || | | ||||||||| ||| || |||
Sbjct 42671 CTTGACTGAGGCTCTCCCTTGCGCTC----TTCTGGGCATGAACGCCAACCTGATGAAGC 42616
Query 125728 AGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGATTTACA 125787
||||||| |||||||| || |||||||| || || | | ||||| ||||
Sbjct 42615 AGTACATTGAGTTTGTTGCCGATCGTCTGCTTGTCGCTCTCGGAAACGAGAAGATCTACA 42556
Query 125788 ACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTT 125847
| || || |||||||| || ||| | ||| || || | || ||||||||||| |
Sbjct 42555 AGTCCTCCAACCCCTTTGACTTTATGGAGAACATTTCTCTGGGCGGCAAGACCAACTTCT 42496
Query 125848 TCGAGAAGAAGGTCAGCGAGTAC 125870
|||||||| ||| ||||||||
Sbjct 42495 TCGAGAAGCGTGTCGGCGAGTAC 42473
>seq135
Length=88816
Score = 136 bits (150), Expect = 6e-27
Identities = 310/459 (68%), Gaps = 8/459 (2%)
Strand=Plus/Minus
Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924
||||||| ||||| || || || || || || || | ||| ||||| | || ||||
Sbjct 29976 GATACGTCGACCAGGGTGGAAACAAGCGTCCTGGTGCCTTTGCCATCTACCTCGAGCCTT 29917
Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984
||||||| || || ||||| || | || | ||||| ||| ||| ||||||| |
Sbjct 29916 GGCACGCCGATGTCTTTGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAAGAGGTCC 29857
Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC--AA 97042
| ||| | ||| |||| || |||||| | || ||| ||||||||||||||||| |
Sbjct 29856 GTGCCCGTGACCTGTTCCTCGCTCTCTGGATCCCTGATCTGTTCATGAAGCGCGTCGAGA 29797
Query 97043 CGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTG 97102
|| ||| | |||| | |||||||| | | || || || | || ||||
Sbjct 29796 AGAACTTGG--ATTGGACTTTGATGTGCCCTAATGAATGCCCTGGCCTTGCTGACTGCTA 29739
Query 97103 GGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGAC 97161
||||| || || ||||| ||| | || ||| | ||||| || || ||||
Sbjct 29738 TGGCGAGGAATTCGAGGCTCTGTATGAGAAGTATGAGAAGGAGGGACGTGGTCGCAAGAC 29679
Query 97162 GAGTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACT 97220
| ||| || | |||| |||||| | | ||| || ||| ||| |||||||| |
Sbjct 29678 TATCCGA-GCTC-AGAAGCTGTGGTACTCTATCCTGGAGGCCCAGACTGAGACTGGTAAC 29621
Query 97221 CCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACC 97280
|| | ||| ||||||||||||| | || ||||| |||||||| || |||| |||
Sbjct 29620 CCCTTCATGCTCTACAAGGATAGCTGCAACCGCAAGAGCAACCAGAAGAACCTGGGAACC 29561
Query 97281 ATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTAC 97319
||| ||||||| || ||||| || ||| | ||||||
Sbjct 29560 ATCCGCAGCTCCAACCTCTGCACTGAGATTATTGAGTAC 29522
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741045870197640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |