Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq219 241 2e-58 seq135 136 6e-27 >seq219 Length=54288 Score = 241 bits (266), Expect = 2e-58 Identities = 578/863 (67%), Gaps = 31/863 (4%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| |||||| |||| ||||| ||||| | ||| ||| | |||||| Sbjct 43315 ATCTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACCGCCGAGGAGATTGATCTG 43256 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAG----AGTTTAT 125134 |||||||| || |||| ||| | | || ||| || ||| |||| | || || Sbjct 43255 TCCAAGGATTTGCACGACTGGAACAACCGCCTGAACGA---TGA-CGAGAAGTACTTCAT 43200 Query 125135 ATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGAC 125194 || ||||| ||||||||||||| | ||| || || || |||||||| || ||| | Sbjct 43199 CTCTCACATCCTGGCCTTCTTTGCTGCCTCGGACGGCATTGTCAACGAGAACCTGGTCGA 43140 Query 125195 ACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCA 125253 || ||| ||| | || || |||| ||| ||||| ||||| ||||| |||| Sbjct 43139 GCGTTTCAGCGGCGAGGTTCAGATCCCCGAGG-CTCGATGCTTCTACGGTTTCCAGATCA 43081 Query 125254 TGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATC 125313 |||| |||||| | ||||| || | |||||| || || |||| ||| || | Sbjct 43080 TGATGGAGAACATCCACTCCGAGACATACTCTCTGCTCATCGACACCTAC-GTCAAGGAG 43022 Query 125314 CGCAACGTAAACACAT-GCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAG 125372 | || | ||| | ||||| ||||| || || || | || | || || || ||| Sbjct 43021 CACAGCCAGCGCACCTACCTCTTCAACGCTATTGAGACTATCCCTTGCATTCGCAAGAAG 42962 Query 125373 GCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTG 125432 || | |||| || ||||||| | ||| | || ||||| | ||| | | || || Sbjct 42961 GCCGAGTGGGCCATCAAGTGGATCCAGGACAAGAACTCTTCCTTTGCCCAGCGTCTCGTT 42902 Query 125433 GCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTC 125492 || || || || || ||||| |||||||| || ||||| ||||||| |||||| Sbjct 42901 GCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGCGGAGCCTTTGCCTCCATCTTCTGGCTC 42842 Query 125493 AAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAG 125552 |||||| | || |||||||| || ||||| | |||||| | || ||||| |||||| Sbjct 42841 AAGAAGAGAGGTCTCATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGACGAG 42782 Query 125553 GGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCG-AGTGCAG 125611 || || ||| ||||||||| | ||| | | ||| || || | || | | Sbjct 42781 GGTCTGCACACTGACTTTGC---TTGCCTG---CTCCACTCTC----ACCTGAAGAACCG 42732 Query 125612 ATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTT 125671 ||||| | || | || |||| | || |||||||| || || || || ||||| Sbjct 42731 CGCCAGCAAGGAGATTATCCGTGACATCATCACTGATGCCGTCAGAATCGAGCAGGAGTT 42672 Query 125672 TCTAACCGA----ATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCG 125727 | || || ||||| || || | | ||||||||| ||| || ||| Sbjct 42671 CTTGACTGAGGCTCTCCCTTGCGCTC----TTCTGGGCATGAACGCCAACCTGATGAAGC 42616 Query 125728 AGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGATTTACA 125787 ||||||| |||||||| || |||||||| || || | | ||||| |||| Sbjct 42615 AGTACATTGAGTTTGTTGCCGATCGTCTGCTTGTCGCTCTCGGAAACGAGAAGATCTACA 42556 Query 125788 ACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTT 125847 | || || |||||||| || ||| | ||| || || | || ||||||||||| | Sbjct 42555 AGTCCTCCAACCCCTTTGACTTTATGGAGAACATTTCTCTGGGCGGCAAGACCAACTTCT 42496 Query 125848 TCGAGAAGAAGGTCAGCGAGTAC 125870 |||||||| ||| |||||||| Sbjct 42495 TCGAGAAGCGTGTCGGCGAGTAC 42473 >seq135 Length=88816 Score = 136 bits (150), Expect = 6e-27 Identities = 310/459 (68%), Gaps = 8/459 (2%) Strand=Plus/Minus Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924 ||||||| ||||| || || || || || || || | ||| ||||| | || |||| Sbjct 29976 GATACGTCGACCAGGGTGGAAACAAGCGTCCTGGTGCCTTTGCCATCTACCTCGAGCCTT 29917 Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984 ||||||| || || ||||| || | || | ||||| ||| ||| ||||||| | Sbjct 29916 GGCACGCCGATGTCTTTGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAAGAGGTCC 29857 Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC--AA 97042 | ||| | ||| |||| || |||||| | || ||| ||||||||||||||||| | Sbjct 29856 GTGCCCGTGACCTGTTCCTCGCTCTCTGGATCCCTGATCTGTTCATGAAGCGCGTCGAGA 29797 Query 97043 CGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTG 97102 || ||| | |||| | |||||||| | | || || || | || |||| Sbjct 29796 AGAACTTGG--ATTGGACTTTGATGTGCCCTAATGAATGCCCTGGCCTTGCTGACTGCTA 29739 Query 97103 GGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGAC 97161 ||||| || || ||||| ||| | || ||| | ||||| || || |||| Sbjct 29738 TGGCGAGGAATTCGAGGCTCTGTATGAGAAGTATGAGAAGGAGGGACGTGGTCGCAAGAC 29679 Query 97162 GAGTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACT 97220 | ||| || | |||| |||||| | | ||| || ||| ||| |||||||| | Sbjct 29678 TATCCGA-GCTC-AGAAGCTGTGGTACTCTATCCTGGAGGCCCAGACTGAGACTGGTAAC 29621 Query 97221 CCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACC 97280 || | ||| ||||||||||||| | || ||||| |||||||| || |||| ||| Sbjct 29620 CCCTTCATGCTCTACAAGGATAGCTGCAACCGCAAGAGCAACCAGAAGAACCTGGGAACC 29561 Query 97281 ATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTAC 97319 ||| ||||||| || ||||| || ||| | |||||| Sbjct 29560 ATCCGCAGCTCCAACCTCTGCACTGAGATTATTGAGTAC 29522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741045870197640