Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06-
08] 1,439 sequences; 37,686,724 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq38 93.3 4e-14
seq5 86.0 5e-12
>seq38
Length=159530
Score = 93.3 bits (102), Expect = 4e-14
Identities = 148/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTC 48576
|| || ||||| ||||||||||| || |||||||| || || | || || |||| ||
Sbjct 139216 ACCAAGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTC-GCTCAGGGTACGACCGTCTTC 139158
Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636
|||||||||||| | | || | ||||||||| || || | || |||||||||
Sbjct 139157 CAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTG 139098
Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696
|| || |||| | | |||||||| | |||||| ||| | ||| || || ||
Sbjct 139097 GATCTTTGATTTGACATTGTCGATGGTATCAGATGACTCCACCTCCAGTGTGATTGTCTT 139038
Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
||||| | ||| || || || ||||||||
Sbjct 139037 GCCGGTTAAAGTCTTGACGAAGATCTGCAT 139008
>seq5
Length=314554
Score = 86.0 bits (94), Expect = 5e-12
Identities = 143/202 (71%), Gaps = 6/202 (3%)
Strand=Plus/Plus
Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGT 48593
|||||| || |||||||| || || | || || | ||||| ||||||||||| ||
Sbjct 52358 CTCCTTCTGGATGTTGTAGTC-GCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCGA 52416
Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--T 48651
| || || |||||||| ||| || | | ||||||||| || || ||||| |
Sbjct 52417 AGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGT 52476
Query 48652 AGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTT 48711
| || ||||| |||| ||||||| ||| | || || || || || ||||| || ||
Sbjct 52477 TGTCG--ATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTT 52534
Query 48712 CACAAAAATCTGCATCGTGTCT 48733
|| |||||||||||| || ||
Sbjct 52535 GACGAAAATCTGCATCTTGCCT 52556
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421243812175439
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |