Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06-
08] 1,439 sequences; 37,686,724 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq12 109 9e-20
seq380 104 4e-18
>seq12
Length=264833
Score = 109 bits (120), Expect = 9e-20
Identities = 87/102 (85%), Gaps = 2/102 (2%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| |||||||| || | ||| |||||| || |||||||| || || |||||||| ||||
Sbjct 250151 CGCCAAGCGTCACCGTAAGAT-TCTTCGTGACAACATCCAGGGTATTACCAAGCCCGCTA 250093
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532
|||| ||||| |||||||||||||| ||||||||| ||||||
Sbjct 250092 TCCGACGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTCTG 250051
Score = 80.6 bits (88), Expect = 4e-11
Identities = 112/157 (71%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595
|| ||||||| |||| |||| ||| | ||| ||||||| || || |||| |||||
Sbjct 249968 TGATCTATGAGGAGACCCGTGGTGTCCTCAAGTCCTTCCTCGAGGGTGTCATCCGTGATG 249909
Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655
| || || ||||||||||| || || ||||| ||||| || | || | ||||| |
Sbjct 249908 CCGTCACATACACCGAGCACGCCAAGCGAAAGACCGTCACATCACTAGACGTTGTCTACG 249849
Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692
| ||||||| || ||||| | | || ||||| ||
Sbjct 249848 CCCTGAAACGACAGGGCCGCACCCTGTACGGTTTCGG 249812
>seq380
Length=25349
Score = 104 bits (114), Expect = 4e-18
Identities = 85/101 (84%), Gaps = 2/101 (2%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| |||||||| || | ||| |||||| || ||||| || || || |||||||| |||||
Sbjct 17693 GCCAAGCGTCACCGTAAGAT-TCTTCGTGACAACATTCAGGGTATTACCAAGCCCGCTAT 17751
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532
||| ||||| |||||||||||||| ||||||||| ||||||
Sbjct 17752 CCGACGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTCTG 17792
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79073884312227
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |