Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq12 109 9e-20 seq380 104 4e-18 >seq12 Length=264833 Score = 109 bits (120), Expect = 9e-20 Identities = 87/102 (85%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| || | ||| |||||| || |||||||| || || |||||||| |||| Sbjct 250151 CGCCAAGCGTCACCGTAAGAT-TCTTCGTGACAACATCCAGGGTATTACCAAGCCCGCTA 250093 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 |||| ||||| |||||||||||||| ||||||||| |||||| Sbjct 250092 TCCGACGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTCTG 250051 Score = 80.6 bits (88), Expect = 4e-11 Identities = 112/157 (71%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || ||||||| |||| |||| ||| | ||| ||||||| || || |||| ||||| Sbjct 249968 TGATCTATGAGGAGACCCGTGGTGTCCTCAAGTCCTTCCTCGAGGGTGTCATCCGTGATG 249909 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || || ||||||||||| || || ||||| ||||| || | || | ||||| | Sbjct 249908 CCGTCACATACACCGAGCACGCCAAGCGAAAGACCGTCACATCACTAGACGTTGTCTACG 249849 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 | ||||||| || ||||| | | || ||||| || Sbjct 249848 CCCTGAAACGACAGGGCCGCACCCTGTACGGTTTCGG 249812 >seq380 Length=25349 Score = 104 bits (114), Expect = 4e-18 Identities = 85/101 (84%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| || | ||| |||||| || ||||| || || || |||||||| ||||| Sbjct 17693 GCCAAGCGTCACCGTAAGAT-TCTTCGTGACAACATTCAGGGTATTACCAAGCCCGCTAT 17751 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||| ||||| |||||||||||||| ||||||||| |||||| Sbjct 17752 CCGACGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTCTG 17792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073884312227