Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq219 154 2e-32 seq135 138 1e-27 >seq219 Length=54288 Score = 154 bits (170), Expect = 2e-32 Identities = 363/544 (67%), Gaps = 8/544 (1%) Strand=Plus/Plus Query 33318 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 33377 ||||||||||||||| | | || || |||||||| || || || || ||||| || || Sbjct 42773 GTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGACC 42832 Query 33378 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGC 33437 | ||| || ||||| || ||||| || || | ||| |||||||| || || || || Sbjct 42833 TCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAGATACCCTCAACAGC 42892 Query 33438 AGCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCGCTGTCATGTATCCACTTTTGAGC 33494 ||||||||||| || | || || || | |||| || |||||||| || Sbjct 42893 AGCAAAGGCAACGAGACGCTGGGCAAAGGAAGAGTTCTTGTCCTGGATCCACTTGATGGC 42952 Query 33495 CCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttt 33554 ||| ||||||||||| | ||||| || || || || || || ||||| ||| | Sbjct 42953 CCACTCGGCCTTCTTGCGAATGCAAGGGATAGTCTCAATAGCGTTGAAGAGGTAGGTGCG 43012 Query 33555 ttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTT 33614 | | || || || || || ||||| | ||| || | || || || ||||| Sbjct 43013 CTGGCTGTGCTCCTTGACGTAGGTGTCGATGAGCAGAGAGTATGTCTCGGAGTGGATGTT 43072 Query 33615 TTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACA 33674 || || ||||| || |||||||| |||| |||||||| ||||| || || | Sbjct 43073 CTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCGGGGATCTGAACCTCGCCGCT 43132 Query 33675 AAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 33734 || || || ||| || || || || || ||||| ||| ||||| || |||| | Sbjct 43133 GAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCCGAGGCAGCAAAGAAGGCCAGGAT 43192 Query 33735 ATGTTTTATAAAATATTTTTCGTC-TGGTGTTA---GTTTATTCCAATCATTGATATCTT 33790 || || || || || ||||| | || | | | || ||||| || | | ||| | Sbjct 43193 GTGAGAGATGAAGTACTTCTCGTCATCGT-TCAGGCGGTTGTTCCAGTCGTGCAAATCCT 43251 Query 33791 TAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCC 33850 | || | ||| | || || | ||||| || || ||||| ||||| || ||||| | || Sbjct 43252 TGGACAGATCAATCTCCTCGGCGGTCCAGAAGGAAGCCTCAGCCTTCTTGTACATTTGCC 43311 Query 33851 AGAT 33854 |||| Sbjct 43312 AGAT 43315 >seq135 Length=88816 Score = 138 bits (152), Expect = 1e-27 Identities = 280/414 (68%), Gaps = 4/414 (1%) Strand=Plus/Plus Query 63168 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63227 ||||| ||||||| || |||||||| | ||| || || | || || || ||||| Sbjct 29754 CCAGGGCATTCATTAGGGCACATCAAAGTCCAATCCAAGTTCTTCTCGACGCGCTTCATG 29813 Query 63228 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 63287 || |||||||| ||||| ||||| | || || || | || | || || || || Sbjct 29814 AACAGATCAGGGATCCAGAGAGCGAGGAACAGGTCACGGGCACGGACCTCTTCCTTGCCG 29873 Query 63288 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63347 ||||| || || |||||| | | | ||| | ||||| || || | ||| ||| Sbjct 29874 TGGTTCTTGCGGAGGTCAAGGAACTCAAAGACATCGGCGTGCCAAGGCTCGAGGTAGATG 29933 Query 63348 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63407 || | | ||||| || |||||||| ||||| || | |||||| || ||||| || | Sbjct 29934 GCAAAGGCACCAGGACGCTTGTTTCCACCCTGGTCGACGTATCTGGCAGTGTTGTTGAAG 29993 Query 63408 ACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCA 63467 || | | ||| || || |||||||| || |||| || || |||| |||||| || Sbjct 29994 ACACGAAGCATGGGGATGATACCGTTGGAGGTACCGTTTGTGCCGGCGATATAAGAGCCT 30053 Query 63468 CTGGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 63525 ||||||| ||| | |||| | || || || || ||||| || || || | | Sbjct 30054 GTGGCACGGATACGGTGGACGTTGA--GGCCGATACCACCAGCCATCTTGGAAATCATGG 30111 Query 63526 CGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAA 63579 | ||| || || || || ||||||||||| ||||| || || |||||| || Sbjct 30112 CACATGTCTTCAAAGTATCGTAGATACCCTCAATGCTGTCGTCCTTCATGTCAA 30165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622935994737240